DNA density is a better indicator of a nuclear bleb than lamin B loss

Bunner, S.; Prince, K.; Srikrishna, K.; Pujadas, E. M.; Pellegrino, P.; Aiello, J.; McCarthy, A. A.; Lawlor, C.; Jagtap, S.; Kuklinski, A.; Yas, G.; LaPointe, N.; Eweka, I.; Eastin, E.; Jackson, O.; Chen, J.; Schramm von Blucher, I.; Hardy, J.; Backman, V.; Janssen, A.; Packard, M.; Dorfman, K.; Almassalha, L.; Bahiru, M. S.; Stephens, A. D.

doi:10.1101/2024.02.06.579152

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bioRxiv · 10.1101/2024.02.06.579152

DNA density is a better indicator of a nuclear bleb than lamin B loss

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Abstract

Nuclear blebs are herniations of the nucleus that occur in diseased nuclei that cause nuclear rupture leading to cellular dysfunction. Chromatin and lamins are two of the major structural components of the nucleus that maintain its shape and function, but their relative roles in nuclear blebbing remain elusive. Lamin B is reported to be lost in blebs by qualitative data while quantitative studies reveal a spectrum of lamin B levels in nuclear blebs dependent on perturbation and cell type. Chromatin has been reported to be decreased or de-compacted in nuclear blebs, but again the data are not conclusive. To determine the composition of nuclear blebs, we compared the immunofluorescence intensity of lamin B and DNA in the main nucleus body and nuclear bleb across cell types and perturbations. Lamin B nuclear bleb levels varied drastically across MEF wild type and chromatin or lamins perturbations, HCT116 lamin B1-GFP imaging, and human disease model cells of progeria and prostate cancer. However, DNA concentration was consistently decreased to about half that of the main nucleus body across all measured conditions. Using Partial Wave Spectroscopic (PWS) microscopy to measure chromatin density in the nuclear bleb vs body we find similar results that DNA is consistently less dense in nuclear blebs. Thus, our data spanning many different cell types and perturbations supports that decreased DNA is a better marker of a nuclear bleb than lamin B levels that vary widely.

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Bunner, S., Prince, K., Srikrishna, K., Pujadas, E. M., Pellegrino, P., Aiello, J., McCarthy, A. A., Lawlor, C., Jagtap, S., Kuklinski, A., Yas, G., LaPointe, N., Eweka, I., Eastin, E., Jackson, O., Chen, J., Schramm von Blucher, I., Hardy, J., Backman, V., Janssen, A., Packard, M., Dorfman, K., Almassalha, L., Bahiru, M. S., Stephens, A. D.. 2024-02-07. DNA density is a better indicator of a nuclear bleb than lamin B loss. https://doi.org/10.1101/2024.02.06.579152

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