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bioRxiv · 10.1101/2023.12.29.573630

Genetic activation of canonical RNA interference in mice

Buccheri, V.·Pasulka, J.·Malik, R.·Loubalova, Z.·Taborska, E.·Horvat, F.·Kulmann, M. I. R.·Jenickova, I.·Prochazka, J.·Sedlacek, R.·Svoboda, P.
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Abstract

Canonical RNA interference (RNAi) is sequence-specific mRNA degradation guided by small interfering RNAs (siRNAs) made from double-stranded RNA (dsRNA) by RNase III Dicer. RNAi has different roles including gene regulation, antiviral immunity or defense against transposable elements. In mammals, RNAi is constrained by Dicer, which is adapted to produce microRNAs, another class of small RNAs. However, RNAi exists in mouse oocytes, which employs a truncated Dicer variant. A homozygous mutation to express only the truncated variant ({Delta}HEL1) causes dysregulation of microRNAs and perinatal lethality in mice. Here, we report the phenotype and RNAi activity in Dicer{Delta}HEL1/wtmice, which are viable, show minimal miRNome changes but their endogenous siRNA levels are increased by an order of magnitude. We show that siRNA abundance is limited by available dsRNA but not by PKR, a dsRNA sensor of innate immunity. Expressing dsRNA from a transgene, functional RNAi in vivo was induced in heart. Dicer{Delta}HEL1/wt mice thus represent a new model for researching mammalian canonical RNAi in vivo and offer an unprecedented platform for addressing claims about its biological roles.

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Buccheri, V., Pasulka, J., Malik, R., Loubalova, Z., Taborska, E., Horvat, F., Kulmann, M. I. R., Jenickova, I., Prochazka, J., Sedlacek, R., Svoboda, P.. 2023-12-29. Genetic activation of canonical RNA interference in mice. https://doi.org/10.1101/2023.12.29.573630

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