Multivalent DNA-encoded lectins on phage enable detecting compositional glycocalyx differences

Lima, G. M.; Chenarboo, Z. J.; Sojitra, M.; Sarkar, S.; Carpenter, E. J.; Yang, C. Y.-L.; Schmidt, E.; Lai, J.; Atrazhev, A.; Yazdan, D.; Peng, C.; Volker, E. A.; Ho, R.; Monteiro, G.; Lai, R.; Mahal, L. K.; Macauley, M. S.; Derda, R.

doi:10.1101/2023.12.13.571601

bioRxiv · 10.1101/2023.12.13.571601

Multivalent DNA-encoded lectins on phage enable detecting compositional glycocalyx differences

Lima, G. M.·Chenarboo, Z. J.·Sojitra, M.·Sarkar, S.·Carpenter, E. J.·Yang, C. Y.-L.·Schmidt, E.·Lai, J.·Atrazhev, A.·Yazdan, D.·Peng, C.·Volker, E. A.·Ho, R.·Monteiro, G.·Lai, R.·Mahal, L. K.·Macauley, M. S.·Derda, R.

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Abstract

Selective detection of disease-associated changes in the cellular glycocalyx is a foundation of modern targeted therapies. Detecting minor changes in the density and identity of glycans on the cell surface is a technological challenge exacerbated by lack of 1:1 correspondence between cellular DNA/RNA and glycan structures on cell surface. We demonstrate that multivalent displays of up to 300 lectins on DNA-barcoded M13 phage on a liquid lectin array (LiLA), detects subtle differences in composition and density of glycans on cells ex vivo and in immune cells or organs in animals. For example, constructs displaying 73 copies of diCBM40 lectin per 700x5 nm virion ({varphi}-CBM73) exhibit non-linear ON/OFF-like recognition of sialoglycans on the surface of normal and cancer cells. In contrast, a high-valency {varphi}-CBM290 display, or soluble diCBM40, exhibit canonical progressive scaling in binding with increased epitope density; these constructs cannot amplify the subtle differences detected by {varphi}-CBM73. Similarly, multivalent displays of diCBM40 and Siglec-7 detect differences in the glycocalyx between stem-like and non-stem populations in cancer cells that are not detected with soluble lectins. Multivalent display of lectins on M13 scaffold with protected DNA inside the phage offer non-destructive detection of minor differences in glycocalyx in cells in vitro and in vivo not feasible to currently available technologies.

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Lima, G. M., Chenarboo, Z. J., Sojitra, M., Sarkar, S., Carpenter, E. J., Yang, C. Y.-L., Schmidt, E., Lai, J., Atrazhev, A., Yazdan, D., Peng, C., Volker, E. A., Ho, R., Monteiro, G., Lai, R., Mahal, L. K., Macauley, M. S., Derda, R.. 2023-12-14. Multivalent DNA-encoded lectins on phage enable detecting compositional glycocalyx differences. https://doi.org/10.1101/2023.12.13.571601

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