A double-ring of human RAD52 remodels replication forks restricting fork reversal

Honda, M.; Razzaghi, M.; Gaur, P.; Malacaria, E.; Di Biagi, L.; Aiello, F. A.; Paintsil, E. A.; Stanfield, A.; Deppe, B. J.; Gakhar, L.; Schnicker, N. J.; Spies, M. A.; Pichierri, P.; Spies, M.

doi:10.1101/2023.11.14.566657

bioRxiv · 10.1101/2023.11.14.566657

A double-ring of human RAD52 remodels replication forks restricting fork reversal

Honda, M.·Razzaghi, M.·Gaur, P.·Malacaria, E.·Di Biagi, L.·Aiello, F. A.·Paintsil, E. A.·Stanfield, A.·Deppe, B. J.·Gakhar, L.·Schnicker, N. J.·Spies, M. A.·Pichierri, P.·Spies, M.

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Abstract

Human RAD521,2 is a multifunctional DNA repair protein involved in several cellular events that support genome stability including protection of stalled DNA replication forks from excessive degradation3-7. In its gatekeeper role, RAD52 binds to and stabilizes stalled replication forks during replication stress protecting them from reversal by SMARCAL15. The structural and molecular mechanism of the RAD52-mediated fork protection remains elusive. Here, using P1 nuclease sensitivity, biochemical and single-molecule analyses we show that RAD52 dynamically remodels replication forks through its strand exchange activity. The presence of the ssDNA binding protein RPA at the fork modulates the kinetics of the strand exchange without impeding the reaction outcome. Mass photometry and single-particle cryo-electron microscopy show that the replication fork promotes a unique nucleoprotein structure containing head-to-head arrangement of two undecameric RAD52 rings with an extended positively charged surface that accommodates all three arms of the replication fork. We propose that the formation and continuity of this surface is important for the strand exchange reaction and for competition with SMARCAL1. One Sentence SummaryUsing cryo-EM, biochemical and single-molecule approaches we show that the structure of stalled DNA replication fork promotes a unique two-ring organization of human RAD52 protein which remodels the fork via DNA strand exchange.

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Honda, M., Razzaghi, M., Gaur, P., Malacaria, E., Di Biagi, L., Aiello, F. A., Paintsil, E. A., Stanfield, A., Deppe, B. J., Gakhar, L., Schnicker, N. J., Spies, M. A., Pichierri, P., Spies, M.. 2023-11-14. A double-ring of human RAD52 remodels replication forks restricting fork reversal. https://doi.org/10.1101/2023.11.14.566657

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