Small but significant genetic differentiation among populations of Phyllachora maydis in the midwestern United States revealed by microsatellite (SSR) markers.

Ross, T. J.; Jumbam, B.; Bonkowski, J.; Chaky, J.; Chilvers, M.; Goodwin, S. B.; Kleczewski, N. M.; Mueller, D. S.; Robertson, A. E.; Smith, D. L.; Telenko, D. E. P.

doi:10.1101/2023.10.31.563566

bioRxiv · 10.1101/2023.10.31.563566

Small but significant genetic differentiation among populations of Phyllachora maydis in the midwestern United States revealed by microsatellite (SSR) markers.

Ross, T. J.·Jumbam, B.·Bonkowski, J.·Chaky, J.·Chilvers, M.·Goodwin, S. B.·Kleczewski, N. M.·Mueller, D. S.·Robertson, A. E.·Smith, D. L.·Telenko, D. E. P.

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Abstract

Phyllachora maydis Maubl, the causal pathogen of tar spot of corn (Zea mays L.), has emerged recently in the United States and Canada. Studies related to its genetic diversity and population structure are limited and are necessary to improve our understanding of this pathogens biology, ecology, epidemiology, and evolutionary potential within this region. This study developed and used 13 microsatellites (SSR markers) to assess the genetic population structure, diversity, gene flow and reproductive mode of 181 P. maydis samples across five states in the Midwest U.S. The polymorphic information content (PIC) of loci ranged from 0.32 to 0.72 per locus, indicating their high utility for assessing the dynamics of P. maydis populations. Analysis of molecular variance (AMOVA) detected a significantly low, but statistically significant genetic differentiation (FST = 0.15) among populations, where 85% of the variance resided within populations. P. maydis populations were highly diverse (He = 0.55), with moderate gene flow (Nm = 2.80), and showed evidence of sexual recombination ([r]d; p = > 0.001). Structure analysis showed the samples were not geographically structured but rather grouped into two genetic clusters (k =2) of severe genetic admixture suggesting possible long-distance dispersal of aerial spores or infected corn materials among the five Midwest states. Both principal coordinate analysis (PCoA) and discriminate analysis of principal component (DAPC) supported the STRUCTURE analysis of the two clusters. These 13 highly polymorphic molecular markers could be used for future investigations of this pathogens population dynamics within the U.S., and possibly populations outside.

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Ross, T. J., Jumbam, B., Bonkowski, J., Chaky, J., Chilvers, M., Goodwin, S. B., Kleczewski, N. M., Mueller, D. S., Robertson, A. E., Smith, D. L., Telenko, D. E. P.. 2023-11-02. Small but significant genetic differentiation among populations of Phyllachora maydis in the midwestern United States revealed by microsatellite (SSR) markers.. https://doi.org/10.1101/2023.10.31.563566

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