Fasten with Pipes

Katz, L. S.; den Bakker, H. C.

doi:10.1101/2023.10.30.564744

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bioRxiv · 10.1101/2023.10.30.564744

Fasten with Pipes

Katz, L. S.·den Bakker, H. C.

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Abstract

Fasten is a versatile bioinformatics tool suite developed to address gaps in the manipulation of sequence data files in the fastq format. Existing tools often lack support for interleaved fastq files and Unix-style pipe file control. Fasten provides a solution by allowing bioinformaticians to efficiently work with paired-end sequence data, facilitating data transformation, and offering competitive speeds. This suite, implemented in Rust, offers a comprehensive manual, continuous integration, and seamless integration into the command line with Unix pipes. Fasten is poised to become an invaluable resource for routine command-line bioinformatics tasks, enhancing the accessibility and flexibility of data processing in the field.

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Katz, L. S., den Bakker, H. C.. 2023-11-02. Fasten with Pipes. https://doi.org/10.1101/2023.10.30.564744

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