Influence of preprocessing, distortion correction and cardiac triggering on the quality of diffusion MR images of spinal cord

Schilling, K.; Combes, A.; Ramadass, K.; Rheault, F.; Sweeney, G.; Prock, L.; Sriram, S.; Cohen-Adad, J.; Gore, J. C.; Landman, B. A.; Smith, S.; O'Grady, K. P.

doi:10.1101/2023.09.26.559530

bioRxiv · 10.1101/2023.09.26.559530

Influence of preprocessing, distortion correction and cardiac triggering on the quality of diffusion MR images of spinal cord

Schilling, K.·Combes, A.·Ramadass, K.·Rheault, F.·Sweeney, G.·Prock, L.·Sriram, S.·Cohen-Adad, J.·Gore, J. C.·Landman, B. A.·Smith, S.·O'Grady, K. P.

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Abstract

Diffusion MRI of the spinal cord (SC) is susceptible to geometric distortion caused by field inhomogeneities, and prone to misalignment across time series and signal dropout caused by biological motion. Several modifications of image acquisition and image processing techniques have been introduced to overcome these artifacts, but their specific benefits are largely unproven and warrant further investigations. We aim to evaluate two specific aspects of image acquisition and processing that address image quality in diffusion studies of the spinal cord: susceptibility corrections to reduce geometric distortions, and cardiac triggering to minimize motion artifacts. First, we evaluate 4 distortion preprocessing strategies on 7 datasets of the cervical and lumbar SC and find that while distortion correction techniques increase geometric similarity to structural images, they are largely driven by the high-contrast cerebrospinal fluid, and do not consistently improve the geometry within the cord nor improve white-to-gray matter contrast. We recommend at a minimum to perform bulk-motion correction in preprocessing and posit that improvements/adaptations are needed for spinal cord distortion preprocessing algorithms, which are currently optimized and designed for brain imaging. Second, we design experiments to evaluate the impact of removing cardiac triggering. We show that when triggering is foregone, images are qualitatively similar to triggered sequences, do not have increased prevalence of artifacts, and result in similar diffusion tensor indices with similar reproducibility to triggered acquisitions. When triggering is removed, much shorter acquisitions are possible, which are also qualitatively and quantitatively similar to triggered sequences. We suggest that removing cardiac triggering for cervical SC diffusion can be a reasonable option to save time with minimal sacrifice to image quality.

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Schilling, K., Combes, A., Ramadass, K., Rheault, F., Sweeney, G., Prock, L., Sriram, S., Cohen-Adad, J., Gore, J. C., Landman, B. A., Smith, S., O'Grady, K. P.. 2023-09-27. Influence of preprocessing, distortion correction and cardiac triggering on the quality of diffusion MR images of spinal cord. https://doi.org/10.1101/2023.09.26.559530

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