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bioRxiv · 10.1101/2023.08.22.553639

Making Proteomics Accessible: RokaiXplorer for interactive analysis of phospho-proteomic data

Yılmaz, S.·Lopes, F. B. T. P.·Schlatzer, D.·Ayati, M.·Chance, M. R.·Koyutürk, M.
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Abstract

In this work, we present RokaiXplorer, an intuitive web tool designed to address the scarcity of user-friendly solutions for proteomics and phospho-proteomics data analysis and visualization. RokaiXplorer streamlines data processing, analysis, and visualization through an interactive online interface, making it accessible to researchers without specialized training in proteomics or data science. With its comprehensive suite of modules, RokaiXplorer facilitates the analysis of phosphosites, proteins, kinases, and gene ontology terms. The tool offers functionalities such as data normalization, statistical testing, enrichment analysis, subgroup analysis, report generator, and multiple visualizations, including volcano plots, bar plots, heatmaps, tables, and interactive networks. Additionally, RokaiXplorer allows researchers to effortlessly deploy their own data browsers, fostering the sharing of research data and findings interactively. By providing simplicity, efficiency, and multi-level data analysis within a single application, it is poised to become a valuable resource for the scientific community working with phospho-proteomic data. Access RokaiXplorer at: http://explorer.rokai.io

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Yılmaz, S., Lopes, F. B. T. P., Schlatzer, D., Ayati, M., Chance, M. R., Koyutürk, M.. 2023-08-25. Making Proteomics Accessible: RokaiXplorer for interactive analysis of phospho-proteomic data. https://doi.org/10.1101/2023.08.22.553639

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