DENND6A couples Arl8b to a Rab34/RILP/dynein complex regulating retrograde lysosomal trafficking and autophagy

Abstract

Lysosomes help maintain cellular proteostasis, and defects in lysosomal positioning and function lead to diseases including neurodegenerative disorders. The spatiotemporal distribution of lysosomes is regulated by small GTPases, including Rabs, which are activated by guanine nucleotide exchange factors (GEFs). DENN domain-bearing proteins are the largest family of Rab GEFs. Using a cell-based assay, we screened the DENN domain protein family member DENND6A for potential GEF activity toward all 60 Rabs and identified 20 potential DENND6A substrates, including Rab34. Here, we demonstrate that DENND6A activates Rab34, which recruits a RILP/dynein complex to the lysosomes, promoting lysosomal retrograde trafficking from the cell periphery to the minus ends of microtubules. Further, we identify DENND6A as an effector of Arl8b, a major regulatory GTPase on lysosomes. Initially known for promoting anterograde transport of lysosomes, Arl8b also facilitates lysosomal retrograde transport. We demonstrate that Arl8b recruits DENND6A to peripheral lysosomes to activate Rab34 and initiate retrograde transport, regulating nutrient-dependent lysosomal juxtanuclear repositioning and loss of DENND6A impairs autophagic flux. Our findings support a model whereby Arl8b/DENND6A/Rab34-dependent lysosomal retrograde trafficking controls autophagy.