Search bioRxiv⌕ Search

bioRxiv · 10.1101/2023.08.18.553900

Burst c-VEP Based BCI: Optimizing Stimulus Design for Enhanced Classification with Minimal Calibration Data and Improved User Experience

Abstract

The Steady State Visual Evoked Potential (SSVEP) is a widely used technique in Brain-Computer Interface (BCI) research due to its high information transfer rate. However, this method has some limitations, including lengthy calibration time and visual fatigue. Recent studies have explored the use of code-modulated Visual Evoked Potentials (c-VEP) with aperiodic flickering visual stimuli as an alternative approach to address these issues. One advantage of c-VEP is that the training of the model is independent of the number and complexity of targets, which helps reduce calibration time. Nevertheless, the existing designs of c-VEP can be further improved to achieve a higher signal-to-noise ratio, and shorten the selection time and the calibration process. In this study, we propose a novel type of code-VEP called "Burst c-VEP" that consists of brief presentations of aperiodic visual flashes at approximately 3Hz. The rationale behind this design is to leverage the sensitivity of the primary visual cortex to transient changes in low-level stimuli features to reliably elicit distinctive series of visual evoked potentials. In comparison to other types of faster-paced codes, burst c-VEP exhibits favorable properties to achieve high decoding performance using convolutional neural networks (CNN). We also explore the attenuation of visual stimuli contrast and intensity to further reduce the perceptual saliency of c-VEP. The proposed solutions were tested through an offline 4-classes c-VEP protocol involving 12 participants. Following a factorial design, participants were asked to focus on c-VEP targets whose pattern (burst and maximum-length sequence) and amplitude (100% or 40% amplitude depth modulation) were manipulated across experimental conditions. Firstly, the full amplitude burst c-VEP codes exhibited higher accuracy ranging from 90.5% (with 17.6s of calibration data) to 95.6% (with 52.8s of calibration data) than its m-sequence counterpart (71.4% to 85.0%). The mean selection time for the two types of codes (1.5s) compared favorably compared to existing studies. Secondly, our findings revealed that lowering the intensity of the stimuli barely decreased the accuracy of the burst to 94.2% accuracy while yielding a higher subjective visual user experience. Taken together, these results demonstrate the high potential of the proposed burst codes to advance BCI beyond the confines of the lab. The collected datasets, along with the proposed CNN architecture implementation, are shared through open-access repositories.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Cabrera-Castillos, K., Ladouce, S., Darmet, L., Dehais, F.. 2023-08-21. Burst c-VEP Based BCI: Optimizing Stimulus Design for Enhanced Classification with Minimal Calibration Data and Improved User Experience. https://doi.org/10.1101/2023.08.18.553900

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The Unreasonable Effectiveness of Cell Types in Describing Neuronal Physiological Features

Single-cell RNA sequencing (scRNA-seq) captures detailed gene expression profiles at scale, while patch-clamp recordings measure intrinsic neuronal electrophysiological properties. Modeling the relations between these two modalities remains a challenge. Here, we compare how well electrophysiological features can be predicted by traditional transcriptomic cell type classification, representations derived from a foundational model (scGPT) pretrained on large-scale scRNA-seq datasets, ion channel-coding genes, and highly variable genes. Using paired transcriptomic and electrophysiological patch-sequencing data from 495 human neurons from neurosurgical tissue, we find that cluster-level cell type representations consistently outperform highly variable gene selection, ion channel gene selection, and context-enriched scGPT embeddings. Notably, performance varies across model architectures and initializations, and the best results are obtained by combining the outputs of separate cell type and scGPT-based models. Together, these findings suggest that traditional discrete cellular classification is highly effective in predicting physiological features. For maximum performance it can be complemented by pretrained transformer models.

neuroscience↗

A nonlinear inhibition pathway underlying cortical responses to tuned holographic optogenetic perturbations

Optogenetics enables causal manipulation of cortical activity. Perturbation responses can be counterintuitive due to network interactions, making theory essential for predicting them. Existing approaches often rely on linear approximations, which fail for many biologically relevant perturbations. Here we develop a nonlinear theory of responses to holographic perturbations in cell-type-specific recurrent networks with structured connectivity. We fit a nonlinear model to mouse V1 data, which shows cotuned-ensemble suppression: perturbing spatially clustered neurons with similar preferred orientations yields markedly stronger short-range suppression than perturbing untuned ensembles. We show that cotuned-ensemble suppression arises from a feature-tuned, nonlinear inhibition pathway implicating somatostatin-positive (SST) interneurons. The theory predicts that cotuned ensembles suppress parvalbumin-positive (PV) neurons but facilitate SST neurons, and links the degree of cotuned-ensemble suppression or facilitation to the variance of the SST response. This framework identifies mechanisms by which nonlinear inhibition sculpts cortical dynamics and establishes a predictive basis for targeted optogenetic interventions.

neuroscience↗

Proteomic signatures of APOE ε4 across human tissues and cell types in Alzheimers disease

The apolipoprotein E {varepsilon}4 (APOE {varepsilon}4) allele is the strongest genetic risk factor for late-onset Alzheimers disease (AD). However, the underlying molecular mechanisms remain unclear. This study included 1691 participants from the Religious Orders Study and Rush Memory and Aging Project (ROSMAP), 1226 participants from the Accelerating Medicines Partnership - Alzheimers Disease (AMP-AD) Diverse Cohorts Study, and 735 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI). To characterise APOE {varepsilon}4 molecular effects, we analysed proteomic data from plasma, cerebrospinal fluid (CSF), and induced pluripotent stem cell (iPSC)-derived astrocytes and neurons, as well as transcriptomic and proteomic data from multiple brain regions. The association of APOE {varepsilon}4 with AD neuropathology was also examined. APOE {varepsilon}4 carriers shared a plasma proteomic signature enriched for immune processes, irrespective of AD diagnosis. A machine learning classifier trained on this signature discriminated APOE {varepsilon}4 carriers from non-carriers in an independent cohort using CSF proteomics. APOE {varepsilon}4 carriage was associated with higher Braak stages and Consortium to Establish a Registry for Alzheimers Disease (CERAD) score. However, only limited APOE {varepsilon}4-associated transcriptomic and proteomic changes were observed in bulk brain tissue, with poor cross-layer concordance. Proteomic analyses of iPSC-derived astrocytes and neurons further revealed cell-type-specific APOE {varepsilon}4-associated changes. APOE {varepsilon}4 is associated with a consistent proteomic signature across plasma and CSF. Its molecular effects in the brain differ across cell types, brain regions and molecular layers. These findings support the need for cell-type-resolved multi-omic studies to elucidate how APOE {varepsilon}4 confers AD risk.

neuroscience↗