A Novel Simulation Framework for Validation of Ecological Network Inference

Kusch, E.; Vinton, A. C.

doi:10.1101/2023.08.05.552122

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bioRxiv · 10.1101/2023.08.05.552122

A Novel Simulation Framework for Validation of Ecological Network Inference

Kusch, E.·Vinton, A. C.

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Abstract

O_LIUnderstanding how the differential magnitude and sign of ecological interactions vary across space is vital to assessing ecosystem resilience to biodiversity loss and predict community assemblies. This necessity for ecological network knowledge and their labour-intensive sampling requirements has spurred the creation of ecological network inference methodology. Recent research has identified inconsistencies in networks inferred using different approaches thus necessitating quantification of inference performance to facilitate choice of network inference approach. C_LIO_LIHere we develop a data simulation method to generate data products fit for network inference and subsequently quantify the validity of two well-established ecological interaction network inference methods - HMSC and COOCCUR. The simulation framework we present here can be parameterised using real-world information (e.g., biological interactions observed in-situ and bioclimatic niche preferences) thus representing network inference capabilities in real-world applications. Using this framework, it is thus possible to evaluate the performance of any ecological network inference approach. C_LIO_LIWe identify a concerningly large range in accuracy of inferred networks as compared to true, realisable association networks. These differences in inference accuracy are governed by a paradigm of input data types and environmental parameter estimation as previously suggested. To establish a workflow for quantification of network inference reliability, we suggest analysis procedures with which to explore inference and detection probabilities of association types of different identity and sign with respect to bioclimatic niche preferences and association strength of association partner-species. C_LIO_LIWith this study, we provide the groundwork with which to validate and compare ecological network inference methods, and ultimately vastly increase our ability to understand and predict species biodiversity across space and time. C_LI

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Kusch, E., Vinton, A. C.. 2023-08-07. A Novel Simulation Framework for Validation of Ecological Network Inference. https://doi.org/10.1101/2023.08.05.552122

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