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bioRxiv · 10.1101/2023.08.04.552020

MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology

Bartnik, A.·Serra, L. M.·Smith, M.·Duncan, W. D.·Wishnie, L.·Ruttenbern, A.·Dwyer, M. G.·Diehl, A. D.
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Abstract

ObjectiveMagnetic resonance imaging of the brain is a useful tool in both the clinic and research settings, aiding in the diagnosis and treatments of neurological disease and expanding our knowledge of the brain. However, there are many challenges inherent in managing and analyzing MRI data, due in large part to the heterogeneity of data acquisition. Materials and MethodsTo address this, we have developed MRIO, the Magnetic Resonance Imaging Acquisition and Analysis Ontology. ResultsMRIO provides well-reasoned classes and logical axioms for the acquisition of several MRI acquisition types and well-known, peer-reviewed analysis software, facilitating the use of MRI data. These classes provide a common language for the neuroimaging research process and help standardize the organization and analysis of MRI data for reproducible datasets. We also provide queries for automated assignment of analyses for given MRI types. DiscussionMRIO aids researchers in managing neuroimaging studies by helping organize and annotate MRI data and integrating with existing standards such as Digital Imaging and Communications in Medicine and the Brain Imaging Data Structure, enhancing reproducibility and interoperability. MRIO was constructed according to Open Biomedical Ontologies Foundry principals and has contributed several terms to the Ontology for Biomedical Investigations to help bridge neuroimaging data to other domains. ConclusionMRIO addresses the need for a "common language" for MRI that can help manage the neuroimaging research, by enabling researchers to identify appropriate analyses for sets of scans and facilitating data organization and reporting.

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Bartnik, A., Serra, L. M., Smith, M., Duncan, W. D., Wishnie, L., Ruttenbern, A., Dwyer, M. G., Diehl, A. D.. 2023-08-07. MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology. https://doi.org/10.1101/2023.08.04.552020

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