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bioRxiv · 10.1101/2023.08.03.551632

Assay for characterizing adsorption-properties of surfaces (APS) sample preparation prior to quantitative omics

Siebels, B.·Moritz, M.·Hübler, D.·Gocke, A.·Schlüter, H.·Voss, H. L.
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Abstract

Analytes during their journey from their natural sources to their identification and quantification are prone to adsorption to surfaces before they enter an analytical instrument, causing false quantities. This problem is especially severe in diverse omics. Here, thousands of analytes with a broad range of chemical properties and thus different affinities to surfaces are quantified within a single analytical run. For quantifying adsorption effects caused by surfaces of sample handling tools, an assay was developed, applying LC-MS/MS-based differential bottom-up proteomics and as probe a reference mixture of thousands of tryptic peptides, covering a broad range of chemical properties. The assay was tested by investigating the adsorption properties of several vials composed of polypropylene, including low-protein-binding polypropylene vials, borosilicate glass vials and low-retention glass vials. In total 3531 different peptides were identified and quantified across all samples and therefore used as probes. A significant number of hydrophobic peptides adsorbed on polypropylene vials. In contrast, only very few peptides adsorbed to low-protein-binding polypropylene vials. The highest number of peptides adsorbed to glass vials, driven by electrostatic as well as hydrophobic interactions. Calculation of the impact of the adsorption of peptides on differential quantitative proteomics showed significant false results. In summary, the new assay is suitable to characterize adsorption properties of surfaces getting into contact with analytes during sample preparation, thereby giving the opportunity to find parameters for minimizing false quantities. Insert Table of Contents artwork here O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=106 SRC="FIGDIR/small/551632v3_ufig1.gif" ALT="Figure 1"> View larger version (34K): org.highwire.dtl.DTLVardef@bafb12org.highwire.dtl.DTLVardef@1b98219org.highwire.dtl.DTLVardef@c3b45org.highwire.dtl.DTLVardef@1074180_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Siebels, B., Moritz, M., Hübler, D., Gocke, A., Schlüter, H., Voss, H. L.. 2023-08-03. Assay for characterizing adsorption-properties of surfaces (APS) sample preparation prior to quantitative omics. https://doi.org/10.1101/2023.08.03.551632

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