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bioRxiv · 10.1101/2023.07.21.550116

Characterization and diversification of AraC/XylS family regulators guided by transposon sequencing

Pearson, A. N.·Incha, M. R.·Ho, C.·Schmidt, M.·Roberts, J. B.·Nava, A. A.·Keasling, J. D.
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Abstract

In this study, we explored the development of engineered inducible systems. Publicly available data from previous transposon sequencing assays were used to identify regulators of metabolism in Pseudomonas putida KT2440. For the AraC-family regulators (AFRs) represented in this data, we posited AFR/promoter/inducer groupings. Eleven promoters were characterized for a response to their proposed inducers in P. putida, and the resultant data were used to create and test nine two-plasmid sensor systems in E. coli. Several of these were further developed into a palette of single-plasmid inducible systems. From these experiments, we observed an unreported inducer response from a previously characterized AFR, demonstrated that the addition of a P. putida transporter improved the sensor dynamics of an AFR in E. coli, and identified an uncharacterized AFR with a novel potential inducer specificity. Finally, targeted mutations in an AFR, informed by structural predictions, enabled further diversification of these inducible plasmids. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=105 SRC="FIGDIR/small/550116v1_ufig1.gif" ALT="Figure 1"> View larger version (35K): org.highwire.dtl.DTLVardef@fb1ee2org.highwire.dtl.DTLVardef@a88f1dorg.highwire.dtl.DTLVardef@4bbd5borg.highwire.dtl.DTLVardef@7cdbfc_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Pearson, A. N., Incha, M. R., Ho, C., Schmidt, M., Roberts, J. B., Nava, A. A., Keasling, J. D.. 2023-07-22. Characterization and diversification of AraC/XylS family regulators guided by transposon sequencing. https://doi.org/10.1101/2023.07.21.550116

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