Tepsin binds LC3B to promote ATG9A export and delivery at the cell periphery

Wallace, N. S.; Gadbery, J. E.; Cohen, C. I.; Kendall, A. K.; Jackson, L. P.

doi:10.1101/2023.07.18.549521

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bioRxiv · 10.1101/2023.07.18.549521

Tepsin binds LC3B to promote ATG9A export and delivery at the cell periphery

Wallace, N. S.·Gadbery, J. E.·Cohen, C. I.·Kendall, A. K.·Jackson, L. P.

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Abstract

Tepsin is an established accessory protein found in Adaptor Protein 4 (AP-4) coated vesicles, but the biological role of tepsin remains unknown. AP-4 vesicles originate at the trans-Golgi network (TGN) and target the delivery of ATG9A, a scramblase required for autophagosome biogenesis, to the cell periphery. Using in silico methods, we identified a putative LC3-Interacting Region (LIR) motif in tepsin. Biochemical experiments using purified recombinant proteins indicate tepsin directly binds LC3B, but not other members, of the mammalian ATG8 family. Calorimetry and structural modeling data indicate this interaction occurs with micromolar affinity using the established LC3B LIR docking site. Loss of tepsin in cultured cells dysregulates ATG9A export from the TGN as well as ATG9A distribution at the cell periphery. Tepsin depletion in a mRFP-GFP-LC3B HeLa reporter cell line using siRNA knockdown increases autophagosome volume and number, but does not appear to affect flux through the autophagic pathway. Re-introduction of wild-type tepsin partially rescues ATG9A cargo trafficking defects. In contrast, re-introducing tepsin with a mutated LIR motif or missing N-terminus does not fully rescue altered ATG9A subcellular distribution. Together, these data suggest roles for tepsin in cargo export from the TGN; delivery of ATG9A-positive vesicles at the cell periphery; and in overall maintenance of autophagosome structure.

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Wallace, N. S., Gadbery, J. E., Cohen, C. I., Kendall, A. K., Jackson, L. P.. 2023-07-18. Tepsin binds LC3B to promote ATG9A export and delivery at the cell periphery. https://doi.org/10.1101/2023.07.18.549521

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