Brightest path tracing: A Python package to trace the brightest path in 2D and 3D images.

Jha, V.; Cudmore, R. H.

doi:10.1101/2023.07.16.549233

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bioRxiv · 10.1101/2023.07.16.549233

Brightest path tracing: A Python package to trace the brightest path in 2D and 3D images.

Jha, V.·Cudmore, R. H.

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Abstract

Brightest path tracing is a widely used image processing technique in several fields including biology, geography, and geology. However, despite the availability of many image processing libraries in Python, few offer an out-of-the-box implementation of a bright-est path tracing algorithm. This paper presents a Python package, brightest-path-lib, that efficiently finds the path with maximum brightness between points in a 2D or 3D image. An example graphical user interface is provided as a Napari plugin. Taken together, the package and plugin provide a powerful and extensible tool for users to efficiently trace structures of interest in 2D or 3D images, regardless of the type of structure being analyzed.

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Jha, V., Cudmore, R. H.. 2023-07-18. Brightest path tracing: A Python package to trace the brightest path in 2D and 3D images.. https://doi.org/10.1101/2023.07.16.549233

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