SALL4B, not targeted by IMiD, is important for SALL4-mediated tumorigenesis

Vu, K. A. L.; Kumari, K.; Liu, B. H.; Gao, C.; Li, F.; Tang, J.; Maddalo, D.; Auld, D.; Casalena, D.; Tian, X.; Liu, M.; Bassal, M. A.; Moein, S.; Iakovleva, V.; Tan, J.; stein, a.; Zhou, Q.; Fischer, P.; Sigua, L.; Qi, J.; Arthanari, H.; Tenen, D.; Chai, L.

doi:10.1101/2023.07.07.548071

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bioRxiv · 10.1101/2023.07.07.548071

SALL4B, not targeted by IMiD, is important for SALL4-mediated tumorigenesis

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Abstract

Immunomodulatory (IMiD) drugs have shown a prominent therapeutic activity in hematologic malignancies; however, their usage in solid tumors is limited. The oncofetal protein SALL4 is essential for cancer cell survival. While IMiDs can induce SALL4 degradation, they fail to induce cell death in SALL4-expressing cancer cell lines. Here, we observed that this inefficacy arose from their selective degradation of the long SALL4 isoform, while sparing the short SALL4B isoform. Selective silencing of SALL4B phenocopied total SALL4 depletion by inducing cancer apoptosis, underscoring the critical role of SALL4B in cancer maintenance. Recognizing that IMiDs cant degrade SALL4B, we performed a high-throughput screen to identify compound(s) that could achieve this. We identified a small molecule compound that degrades both SALL4 isoforms with enhanced potency towards SALL4B in a cereblon- and proteasome-dependent manner. This compound suppressed cancer cell proliferation and attenuated tumor development in both cell line and patient-derived xenograft models. Transcriptomic analyses further revealed convergent effects of genetic and pharmacologic SALL4B depletion on DNA damage response and replication pathways. Together, these findings identify SALL4B as the therapeutically relevant isoform in SALL4-dependent cancers and establish isoform-aware targeted degradation as a strategy to overcome the limitation of IMiDs in solid tumors. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=142 SRC="FIGDIR/small/548071v2_ufig1.gif" ALT="Figure 1"> View larger version (66K): org.highwire.dtl.DTLVardef@99670dorg.highwire.dtl.DTLVardef@13ca58forg.highwire.dtl.DTLVardef@998e7eorg.highwire.dtl.DTLVardef@15a1875_HPS_FORMAT_FIGEXP M_FIG Graphical Abstract | Identification of QE: a non-IMiDs degrader capable of degrading both SALL4A and SALL4B, triggers anti-cancer effects beyond IMiDs, and Impacts of QE on Key Validated SALL4B Targets and Pathways C_FIG

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Vu, K. A. L., Kumari, K., Liu, B. H., Gao, C., Li, F., Tang, J., Maddalo, D., Auld, D., Casalena, D., Tian, X., Liu, M., Bassal, M. A., Moein, S., Iakovleva, V., Tan, J., stein, a., Zhou, Q., Fischer, P., Sigua, L., Qi, J., Arthanari, H., Tenen, D., Chai, L.. 2023-07-07. SALL4B, not targeted by IMiD, is important for SALL4-mediated tumorigenesis. https://doi.org/10.1101/2023.07.07.548071

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