Single neuron analysis of aging associated changes in learning reveals progressive impairmentsin transcriptional plasticity

Badal, K. K.; Sadhu, A.; McCracken, C.; Raveendra, B. L.; Lozano-Villada, S.; Shetty, A. C.; Gillette, P.; Zhao, Y.; Stommes, D.; Fieber, L. A.; Schmale, M. C.; Mahurkar, A.; Hawkins, R. D.; Puthanveettil, S. V.

doi:10.1101/2023.06.23.546336

bioRxiv · 10.1101/2023.06.23.546336

Single neuron analysis of aging associated changes in learning reveals progressive impairmentsin transcriptional plasticity

Badal, K. K.·Sadhu, A.·McCracken, C.·Raveendra, B. L.·Lozano-Villada, S.·Shetty, A. C.·Gillette, P.·Zhao, Y.·Stommes, D.·Fieber, L. A.·Schmale, M. C.·Mahurkar, A.·Hawkins, R. D.·Puthanveettil, S. V.

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Abstract

Molecular mechanisms underlying aging associated impairments in learning and long-term memory storage are poorly understood. Here we leveraged the single identified motor neuron L7 in Aplysia, which mediates a form of non-associative learning, sensitization of the siphon-withdraw reflex, to assess the transcriptomic correlates of aging associated changes in learning. RNAseq analysis of the single L7 motor neuron isolated following short-term or long-term sensitization training of 8,10 and 12 months old Aplysia, corresponding to mature, late mature and senescent stages, has revealed progressive impairments in transcriptional plasticity during aging. Specifically, we observed modulation of the expression of multiple lncRNAs and mRNAs encoding transcription factors, regulators of translation, RNA methylation, and cytoskeletal rearrangements during learning and their deficits during aging. Our comparative gene expression analysis also revealed the recruitment of specific transcriptional changes in two other neurons, the motor neuron L11 and the giant cholinergic neuron R2 whose roles in long-term sensitization were previously not known. Taken together, our analyses establish cell type specific progressive impairments in the expression of learning- and memory-related components of the transcriptome during aging.

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Badal, K. K., Sadhu, A., McCracken, C., Raveendra, B. L., Lozano-Villada, S., Shetty, A. C., Gillette, P., Zhao, Y., Stommes, D., Fieber, L. A., Schmale, M. C., Mahurkar, A., Hawkins, R. D., Puthanveettil, S. V.. 2023-06-25. Single neuron analysis of aging associated changes in learning reveals progressive impairmentsin transcriptional plasticity. https://doi.org/10.1101/2023.06.23.546336

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