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bioRxiv · 10.1101/2023.05.31.543092

conn2res: A toolbox for connectome-based reservoir computing

Suarez, L. E.·Mihalik, A.·Milisav, F.·Marshall, K.·Li, M.·Vertes, P. E.·Lajoie, G.·Misic, B.
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Abstract

The connection patterns of neural circuits form a complex network. How signaling in these circuits manifests as complex cognition and adaptive behaviour remains the central question in neuroscience. Concomitant advances in connectomics and artificial intelligence open fundamentally new opportunities to understand how connection patterns shape computational capacity in biological brain networks. Reservoir computing is a versatile paradigm that uses nonlinear dynamics of high-dimensional dynamical systems to perform computations and approximate cognitive functions. Here we present conn2res: an open-source Python toolbox for implementing biological neural networks as artificial neural networks. conn2res is modular, allowing arbitrary architectures and arbitrary dynamics to be imposed. The toolbox allows researchers to input connectomes reconstructed using multiple techniques, from tract tracing to noninvasive diffusion imaging, and to impose multiple dynamical systems, from simple spiking neurons to memristive dynamics. The versatility of the conn2res toolbox allows us to ask new questions at the confluence of neuroscience and artificial intelligence. By reconceptualizing function as computation, conn2res sets the stage for a more mechanistic understanding of structure-function relationships in brain networks.

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Suarez, L. E., Mihalik, A., Milisav, F., Marshall, K., Li, M., Vertes, P. E., Lajoie, G., Misic, B.. 2023-06-04. conn2res: A toolbox for connectome-based reservoir computing. https://doi.org/10.1101/2023.05.31.543092

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