ChromaX: a fast and scalable breeding program simulator

Younis, O. G.; Turchetta, M.; Ariza Suarez, D.; Yates, S.; Studer, B.; Athanasiadis, I. N.; Krause, A.; Buhmann, J. M.; Corinzia, L.

doi:10.1101/2023.05.29.542709

bioRxiv · 10.1101/2023.05.29.542709

ChromaX: a fast and scalable breeding program simulator

Younis, O. G.·Turchetta, M.·Ariza Suarez, D.·Yates, S.·Studer, B.·Athanasiadis, I. N.·Krause, A.·Buhmann, J. M.·Corinzia, L.

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Abstract

SummaryChromaX is a Python library that enables the simulation of genetic recombination, genomic estimated breeding value calculations, and selection processes. By utilizing GPU processing, it can perform these simulations up to two orders of magnitude faster than existing tools with standard hardware. This offers breeders and scientists new opportunities to simulate genetic gain and optimize breeding schemes. Availability and ImplementationThe documentation is available at https://chromax.readthedocs.io The code is available at https://github.com/kora-labs/chromax Contactomargallalaly.younis@inf.ethz.ch, luca.corinzia@inf.ethz.ch, matteo.turchetta@inf.ethz.ch

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Younis, O. G., Turchetta, M., Ariza Suarez, D., Yates, S., Studer, B., Athanasiadis, I. N., Krause, A., Buhmann, J. M., Corinzia, L.. 2023-05-31. ChromaX: a fast and scalable breeding program simulator. https://doi.org/10.1101/2023.05.29.542709

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