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bioRxiv · 10.1101/2023.05.11.540462

Suitability Evaluation of Toehold Switch and EXPAR for Cell-Free MicroRNA Biosensor Development

Copeland, C. E.·Kwon, Y.-C.
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Abstract

The development of a robust and cost-effective sensing platform for microRNA (miRNA) is of paramount importance in detecting and monitoring various diseases. Current miRNA detection methods are marred by low accuracy, high cost, and instability. The toehold switch riboregulator has shown promising results in detecting viral RNAs integrated with the cell-free system (CFS). This study aimed to leverage the toehold switch technology to detect miRNA in the CFS and to incorporate the exponential amplification reaction (EXPAR) to bring the detection to clinically relevant levels. We assessed various EXPAR DNA templates under different temperatures and additives to enhance the accuracy of the sensing platform. Furthermore, different structures of toehold switches were tested with either high-concentration synthetic miRNA or EXPAR product to assess sensitivity. Herein, we elucidated the mechanisms of the toehold switch and EXPAR, presented the findings of these optimizations, and discussed the potential benefits and drawbacks of their combined use. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=59 SRC="FIGDIR/small/540462v1_ufig1.gif" ALT="Figure 1"> View larger version (13K): org.highwire.dtl.DTLVardef@1902d64org.highwire.dtl.DTLVardef@94313forg.highwire.dtl.DTLVardef@12d59ddorg.highwire.dtl.DTLVardef@66ecfc_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Copeland, C. E., Kwon, Y.-C.. 2023-05-12. Suitability Evaluation of Toehold Switch and EXPAR for Cell-Free MicroRNA Biosensor Development. https://doi.org/10.1101/2023.05.11.540462

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