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bioRxiv · 10.1101/2023.04.24.538075

A guide to the in vitro reconstitution of Cdc42 GTPase activity and its regulation

Tschirpke, S.·van Opstal, F.·van der Valk, R.·Daalman, W. K.-G.·Laan, L.
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Abstract

Cdc42 is a small Rho-type GTPase and the main regulator of cell division in eukaryotes. It is surrounded by a large network of regulatory proteins. To understand the processes around cell division, in-depth understanding of Cdc42 and its regulation is required. In vitro reconstitutions are a suitable tool for such detailed mechanistic studies, as they allow a high level of control over the conditions and components used and. For these Cdc42 and its regulators need to be expressed, purified, and tested for their activity. There are many methods described for this, but their details, possible difficulties, and points of failure are rarely discussed. This makes in vitro studies on Cdc42 less accessible to scientists that have a background different from biochemistry. We here present our experience with working with Cdc42 in vitro. We describe the recombinant expression and purification behaviour of 12 Cdc42, six Cdc42-mNeonGreenSW and four Cdc42-sfGFPSW constructs in E. coli. We explore Cdc42 dimerisation in vitro and assess its activity using GTPase Glo assays and Flag-pulldown assays. GTPase Glo assays turn out to be a reliable tool to quantitatively asses GTPase activities, wheareas pulldown experiments are more error prone. We find that most Cdc42 constructs, with the exception of those with an N-terminal Twin-Step-tag, show a similar GTPase activity and interaction with the GDP/GTP exchange factor Cdc24. We close with using enterokinase and TEV protease to generate untagged Cdc42. Enterokinase also cuts Cdc42 in an undesired position. TEV protease leads to the desired product, which retains its GTPase activity but shows a reduced Cdc24 interaction. The work presented here acts as a guide for scientists desiring to work with Cdc42 in vitro through describing Cdc42s properties in detail and examining assays that can be used to study its behaviour or act as activity checks. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=77 SRC="FIGDIR/small/538075v3_ufig1.gif" ALT="Figure 1"> View larger version (21K): org.highwire.dtl.DTLVardef@18e6ecborg.highwire.dtl.DTLVardef@c068aorg.highwire.dtl.DTLVardef@1816ac5org.highwire.dtl.DTLVardef@188baa5_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Tschirpke, S., van Opstal, F., van der Valk, R., Daalman, W. K.-G., Laan, L.. 2023-04-24. A guide to the in vitro reconstitution of Cdc42 GTPase activity and its regulation. https://doi.org/10.1101/2023.04.24.538075

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