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bioRxiv · 10.1101/2023.04.06.535863

The pitfalls of negative data bias for the T-cell epitope specificity challenge

Dens, C.·Laukens, K.·Bittremieux, W.·Meysman, P.
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Abstract

Summary / AbstractEven high-performing machine learning models can have problems when deployed in a real-world setting if the data used to train and test the model contains biases. TCR-epitope binding prediction for novel epitopes is a very important but yet unsolved problem in immunology. In this article, we describe how the technique used to create negative data for the TCR-epitope interaction prediction task can lead to a strong bias and makes that the performance drops to random when tested in a more realistic scenario.

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Dens, C., Laukens, K., Bittremieux, W., Meysman, P.. 2023-04-06. The pitfalls of negative data bias for the T-cell epitope specificity challenge. https://doi.org/10.1101/2023.04.06.535863

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