TERT expression is associated with metastasis from thin primaries, exhausted CD4+ T cells in melanoma and with DNA repair across cancer entities

Kuhn, C. K.; Meister, J.; Kreft, S.; Stiller, M.; Puppel, S.-H.; Zaremba, A.; Scheffler, B.; Ullrich, V.; Schöneberg, T.; Schadendorf, D.; Horn, S.

doi:10.1101/2023.01.25.525565

bioRxiv · 10.1101/2023.01.25.525565

TERT expression is associated with metastasis from thin primaries, exhausted CD4+ T cells in melanoma and with DNA repair across cancer entities

Kuhn, C. K.·Meister, J.·Kreft, S.·Stiller, M.·Puppel, S.-H.·Zaremba, A.·Scheffler, B.·Ullrich, V.·Schöneberg, T.·Schadendorf, D.·Horn, S.

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Abstract

Telomerase reverse transcriptase (TERT) promoter mutations occur frequently in cancer, have been associated with increased TERT expression and cell proliferation, and could potentially influence therapeutic regimens for melanoma. As the role of TERT expression in malignant melanoma and the non-canonical functions of TERT remain understudied, we aimed to extend the current knowledge on both types of TERT alterations with respect to survival, further clinical and molecular parameters. Using multivariate models, TERT alterations were not consistently associated with survival in melanoma cohorts under immune checkpoint inhibition. The presence of CD4+ T cells increased with TERT expression and correlated with the expression of exhaustion markers. While the frequency of promoter mutations did not change with Breslow thickness, TERT expression was increased in metastases arising from thinner primaries. Enrichment analyses of single-cell RNA-seq showed TERT expression is associated with genes involved in cell migration and dynamics of the extracellular matrix, supporting the role of TERT during invasion and metastasis. Co-regulated genes in several bulk tumors and single-cell RNA-seq cohorts also indicated non-canonical functions of TERT related to mitochondrial DNA stability and nuclear DNA repair in line with increased TERT expression during chromothripsis (PCAWG cohort) and under hypoxic conditions (PCAWG and SKCM cohorts). Also in glioblastoma (Klughammer and PCAWG cohorts), TERT was co-expressed with DNA repair genes. Our results thus indicate a relevance of TERT expression in melanoma metastasis, T cell dysfunction and DNA repair across cancer entities. SignificanceIn addition to the frequently occurring TERT promoter mutations, we test TERT expression with respect to clinical and molecular associates, extending the canonical role of TERT in melanoma and other cancer entities.

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Kuhn, C. K., Meister, J., Kreft, S., Stiller, M., Puppel, S.-H., Zaremba, A., Scheffler, B., Ullrich, V., Schöneberg, T., Schadendorf, D., Horn, S.. 2023-01-26. TERT expression is associated with metastasis from thin primaries, exhausted CD4+ T cells in melanoma and with DNA repair across cancer entities. https://doi.org/10.1101/2023.01.25.525565

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