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bioRxiv · 10.1101/2023.01.21.525004

Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires

Guberman-Pfeffer, M. J.
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Abstract

Helical homopolymers of multiheme cytochromes catalyze biogeochemically significant electron transfers with a reported 103-fold variation in conductivity. Herein, classical molecular dynamics and hybrid quantum/classical molecular mechanics are used to elucidate the structural determinants of the redox potentials and conductivities of the tetra-, hexa-, and octaheme outer-membrane cytochromes E, S, and Z, respectively, from Geobacter sulfurreducens. Second-sphere electrostatic interactions acting on minimally polarized heme centers are found to regulate redox potentials over a computed 0.5-V range. However, the energetics of redox conduction are largely robust to the structural diversity: Single-step electronic couplings ([<]Hmn[>]), reaction free energies [Formula], and reorganization energies ({lambda}mn) are always respectively <|0.026|, <|0.26|, and between 0.5 - 1.0 eV. With these conserved parameter ranges, redox conductivity differed by less than a factor of 10 among the nanowires and is sufficient to meet the demands of cellular respiration if 102 - 103 nanowires are expressed. The nanowires are proposed to be differentiated by the protein packaging to interface with a great variety of environments, and not by conductivity, because the rate-limiting electron transfers are elsewhere in the respiratory process. Conducting-probe atomic force microscopy measurements that find conductivities 103-106-fold more than cellular demands are suggested to report on functionality that is either not used or not accessible under physiological conditions. The experimentally measured difference in conductivity between Omc- S and Z is suggested to not be an intrinsic feature of the CryoEM-resolved structures.

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Guberman-Pfeffer, M. J.. 2023-01-22. Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires. https://doi.org/10.1101/2023.01.21.525004

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