Defining T cell receptor repertoires using nanovial-based affinity and functional screening

Koo, D.; Mao, Z.; Dimatteo, R.; Tsubamoto, N.; Noguchi, M.; McLaughlin, J.; Tran, W.; Lee, S.; Cheng, D.; de Rutte, J.; Burton Sojo, G.; Witte, O.; Di Carlo, D.

doi:10.1101/2023.01.17.524440

bioRxiv · 10.1101/2023.01.17.524440

Defining T cell receptor repertoires using nanovial-based affinity and functional screening

Koo, D.·Mao, Z.·Dimatteo, R.·Tsubamoto, N.·Noguchi, M.·McLaughlin, J.·Tran, W.·Lee, S.·Cheng, D.·de Rutte, J.·Burton Sojo, G.·Witte, O.·Di Carlo, D.

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Abstract

The ability to selectively bind to antigenic peptides and secrete cytokines can define populations of cells with therapeutic potential in emerging T cell receptor (TCR) immunotherapies. We leverage cavity-containing hydrogel microparticles, called nanovials, each coated with millions of peptide-major histocompatibility complex (pMHC) monomers to isolate antigen-reactive T cells. T cells are captured and activated by pMHCs and secrete cytokines on nanovials, allowing sorting based on both affinity and function. The TCRs of sorted cells on nanovials are sequenced, recovering paired {beta}-chains using microfluidic emulsion-based single-cell sequencing. By labeling nanovials having different pMHCs with unique oligonucleotide-barcodes we could link TCR sequence to targets with 100% accuracy. We identified with high specificity an expanded repertoire of functional TCRs targeting viral antigens compared to standard techniques. One-sentence SummaryAffinity and secretion-based screening of antigen-specific T cells using nanovials defines a functional TCR repertoire

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Koo, D., Mao, Z., Dimatteo, R., Tsubamoto, N., Noguchi, M., McLaughlin, J., Tran, W., Lee, S., Cheng, D., de Rutte, J., Burton Sojo, G., Witte, O., Di Carlo, D.. 2023-01-20. Defining T cell receptor repertoires using nanovial-based affinity and functional screening. https://doi.org/10.1101/2023.01.17.524440

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