A versatile in situ cofactor enhancing system for meeting cellular demands for engineered metabolic pathways

Joroensuk, J.; Sutthaphirom, C.; Phonbuppha, J.; Chinantuya, W.; Kesornpun, C.; Akeratchatapan, N.; Kittipanukul, N.; Phatinuwat, K.; Atichartpongkul, S.; Fuangthong, M.; Pongtharangkul, T.; Hollmann, F.; Chaiyen, P.

doi:10.1101/2023.01.08.523081

bioRxiv · 10.1101/2023.01.08.523081

A versatile in situ cofactor enhancing system for meeting cellular demands for engineered metabolic pathways

Joroensuk, J.·Sutthaphirom, C.·Phonbuppha, J.·Chinantuya, W.·Kesornpun, C.·Akeratchatapan, N.·Kittipanukul, N.·Phatinuwat, K.·Atichartpongkul, S.·Fuangthong, M.·Pongtharangkul, T.·Hollmann, F.·Chaiyen, P.

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Abstract

Cofactor imbalance obstructs the productivities of metabolically engineered cells. Herein, we employed a minimally perturbing system, xylose reductase and lactose (XR/lactose), to increase levels of a pool of sugar-phosphates which are connected to the biosynthesis of NAD(P)H, FAD, FMN and ATP in Escherichia coli. The XR/lactose system could increase the amounts of the precursors of these cofactors and was tested with three different metabolically engineered cell systems (fatty alcohol biosynthesis, bioluminescence light generation and alkane biosynthesis) with different cofactor demands. Productivities of these cells were increased 2-4-fold by the XR/lactose system. Untargeted metabolomic analysis revealed different metabolite patterns among these cells; demonstrating that only metabolites involved in relevant cofactor biosynthesis were altered. The results were also confirmed by transcriptomic analysis. Another sugar reducing system (glucose dehydrogenase, GDH) could also be used to increase fatty alcohol production but resulted in less yield enhancement than XR. This work demonstrates that the approach of increasing cellular sugar phosphates can be a generic tool to increase in vivo cofactor generation upon cellular demand for synthetic biology. TeaserUse of sugar and sugar reductase to increase sugar phosphates for enhancing in situ synthesis of cofactors upon cellular demand for synthetic biology.

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Joroensuk, J., Sutthaphirom, C., Phonbuppha, J., Chinantuya, W., Kesornpun, C., Akeratchatapan, N., Kittipanukul, N., Phatinuwat, K., Atichartpongkul, S., Fuangthong, M., Pongtharangkul, T., Hollmann, F., Chaiyen, P.. 2023-01-08. A versatile in situ cofactor enhancing system for meeting cellular demands for engineered metabolic pathways. https://doi.org/10.1101/2023.01.08.523081

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