The miR156-targeted SlSBP15 represses tomato shoot branching via modulating auxin transport and interacting with GOBLET and BRANCHED1b

Nogueira, F.; Barrera Rojas, C. H.; Vicente, M. H.; Pinheiro Brito, D. A.; Silva, E.; Lopez, A. M.; Ferigolo, L. F.; do Carmo, R. M.; Silva, C.; Silva, G.; Correa, J.; Notini, M.; Freschi, L.; Cubas, P.

doi:10.1101/2022.12.21.521468

bioRxiv · 10.1101/2022.12.21.521468

The miR156-targeted SlSBP15 represses tomato shoot branching via modulating auxin transport and interacting with GOBLET and BRANCHED1b

Nogueira, F.·Barrera Rojas, C. H.·Vicente, M. H.·Pinheiro Brito, D. A.·Silva, E.·Lopez, A. M.·Ferigolo, L. F.·do Carmo, R. M.·Silva, C.·Silva, G.·Correa, J.·Notini, M.·Freschi, L.·Cubas, P.

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Abstract

The microRNA156 (miR156)/SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL/SBP) regulatory hub is highly conserved among phylogenetically distinct species, but how it interconnects multiple pathways to converge to common integrators controlling shoot architecture is still unclear. Here, we demonstrated that the miR156/SlSBP15 hub modulates tomato shoot branching (SB) by connecting phytohormones with important genetic pathways regulating both axillary bud (AB) development and outgrowth. We verified that plants overexpressing the miR156 (156-OE plants) display high SB, whereas plants overexpressing a miR156-resistant SlSBP15 alelle (rSBP15 plants) display arrested SB and are able to partially restore the wild-type (WT) phenotype in156-OE background. Although rSBP15 plants showed ABs smaller than MT, its activation is dependent on shoot apex-derived auxin transport inhibition. Additionally, hormonal measurements reveal that IAA and ABA concentrations were lower in 156-OE and higher in rSBP15-OE plants. SlSBP15 regulates AB development and outgrowth by inhibiting auxin transport and the activity of GOBLET (GOB), and by interacting with BRANCHED1b (SlBRC1b) at the protein level to control abscisic acid (ABA) levels within ABs. Our data provide a new mechanism by which the miR156/SPL/SBP hub regulates SB, and suggest that SlSBP15 has potential applications in improving tomato architecture.

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Nogueira, F., Barrera Rojas, C. H., Vicente, M. H., Pinheiro Brito, D. A., Silva, E., Lopez, A. M., Ferigolo, L. F., do Carmo, R. M., Silva, C., Silva, G., Correa, J., Notini, M., Freschi, L., Cubas, P.. 2022-12-22. The miR156-targeted SlSBP15 represses tomato shoot branching via modulating auxin transport and interacting with GOBLET and BRANCHED1b. https://doi.org/10.1101/2022.12.21.521468

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