Search bioRxiv⌕ Search

bioRxiv · 10.1101/2022.12.19.521043

Combining modelling and experimental approaches to assess the feasibility of developing rice-oil palm agroforestry system

Abstract

Climatic hazards affecting the main rice producing regions of Indonesia increase the risk of annual production loss and encourage the development of innovative strategies to maintain stable production. Conversion of oil palm monocultures to rice-based intercropping systems is a strategy to be considered, but relies on the existence of suitable planting management that optimizes both palm productivity while providing enough light for undergrowth rice varieties tolerant to shady conditions. This paper proposes to couple a model of light interception on virtual canopies with indoor experiments to evaluate the feasibility of developing rice-oil palm agroforestry systems. We first selected a planting design that optimized the transmitted light available for rice using a functional-structural plant model (FSPM) of oil palm. Secondly, we reproduced the light regime simulated with specific changes in the intensity and the daily fluctuation of light in controlled conditions. Three light treatments were designed to test independently the effect of daily light quantity and the effect of diurnal fluctuation on contrasted rice subpopulations. Light quantity was the main factor driving changes in plant morphology and architecture, while light fluctuation only appeared to explain variations in yield components and phenology. This study highlighted the importance of light fluctuation in the grain filling process and resource reallocation. The conservation of relative change among varieties between treatments suggests that varietal responses to low light are likely to be heritable, and that varietal screening under full light can provide clue on varietal behavior under low light. However, the identification of specific traits such as a limited expansion of leaf area and a conservation of leaf senescence under shade and high light fluctuation paves the way for selecting varieties dedicated to agroforestry systems. Further investigations including light quality and larger genotypic population to screen are discussed.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Perez, R. P. A., VEZY, R., Bordon, R., Laisne, T., Roques, S., Rebolledo, M.-C., Rouan, L., Fabre, D., Gibert, O., de Raissac, M.. 2022-12-20. Combining modelling and experimental approaches to assess the feasibility of developing rice-oil palm agroforestry system. https://doi.org/10.1101/2022.12.19.521043

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Molecular and phytochemical investigation of medicinal Rhododendron spp. in the Qinghai-Xizang Plateau: the botanical sources of the traditional Tibetan medicine "Tale"

The Qinghai-Xizang Plateau in China is a hotspot for Rhododendron species, with approximately 400 species distributed across the region. Various Rhododendron species in this area have been used medicinally in traditional Tibetan medicine for a long time and are collectively referred to as "Tale." Furthermore, "Tale" is classified as "Talegabao" or "Talenabao," depending on the species. These two types of medicine have similar but distinct properties, and "Talenabao" is usually used as an alternative to "Talegabao." However, differences in their phytochemical compositions and methods for discriminating between them have not been examined. To solve these problems limited the use of "Tale" medicines, 46 plant specimens belonging to nine Rhododendron species were collected from the Qinghai-Xizang Plateau. Molecular methods based on the internal transcribed spacer 2 (ITS2) region of nuclear DNA and psbA-trnH regions of chloroplast DNA were applied to these samples. In addition, 10 flavonoid compounds were quantitatively determined by HPLC. The results indicated psbA-trnH region successfully distinguished the species used as "Talegabao" or "Talenabao," whereas ITS2 failed to distinguish them because of its high degree of conservation. All 10 compounds were detected in all samples. However, the species used as "Talegabao" had more than twice the total content of the 10 flavonoid compounds observed in the species used as "Talenabao." Moreover, differences in the contents of certain compounds among species were detected, indicating potential chemical markers for the quality evaluation of "Tale" medicines. "Talegabao" is the first choice among "Tale" medicines. "Talenabao" can be used as an alternative to "Talegabao"; however, the appropriate dose requires further discussion in practical use. The psbA-trnH region is recommended as a DNA barcode for distinguishing between these two types of medicines.

plant biology↗

Accessory B Chromosomes Alter Chromatin Accessibility and Gene Expression in Maize Pollen Nuclei

B chromosomes in maize (Zea mays L.) are supernumerary, nonessential chromosomes that exhibit non-Mendelian inheritance through chromosome drive. During the second pollen mitosis, they undergo nondisjunction, resulting in their preferential transmission via B-containing sperm cells. Although their transmission mechanisms have been extensively characterized, the effects on chromatin organization and transcriptional regulation in gametophytic cells remain poorly understood. Here, we combined flow cytometric sorting of pollen nuclei with an assay for transposase-accessible chromatin sequencing (ATAC-seq) and RNA sequencing (RNA-seq) to investigate the impact of B chromosomes on chromatin accessibility and gene expression in mature maize pollen. Using pollen nuclei isolated from a maize inbred line B73 carrying zero and two B chromosomes, we generated high-purity datasets suitable for integrated chromatin and transcriptomic analyses. We identified extensive chromatin accessibility and transcriptional activity at B-chromosome loci. Importantly, the presence of B chromosomes was also associated with altered chromatin accessibility and gene expression on the standard A chromosomes, revealing regulatory effects extending beyond the B chromosome itself. Together, these findings contribute to a broader understanding of effects of selfish genetic elements in plants.

plant biology↗

Melanoidins Suppress Cucumber and Tomato Diseases Incited by Pathogens that are Oomycetes, Bacteria and a Virus

We recently reported that solutions of the nitrogenous compounds melanoidins (M), that are formed during the final stages of the Maillard Reaction, are inducers of plant resistance (Elad et al. 2026). M promoted immunity and induced disease resistance through an effect on the transcriptome, primarily through the salicylic acid pathway. Here we tested the effect of M on plant diseases that are caused by Oomycetes, bacteria and a tobamovirus. Drench and spray of M suppressed Pythium aphanidermatum damping off in cucumber, cucumber downy mildew (Pseudoperonospera cubensis), tomato late blight (Phytophthora infestans), bacterial speck (Pseudomonas syringae pv. tomato), bacterial canker (Clavibacter michiganensis subsp. michiganensis) and the Tobamovirus Tomato brown rugose fruit virus (ToBRFV) in tomato. In various experiments control was achieved by concentrations of 0.03 and 0.1% and on older and younger leaves and even in long term experiments where the M was applied for ca 11 weeks. It can be concluded that the disease resistance inducer M can suppress soilborne and foliar diseases that are caused by Oomycetes, bacteria and a virus of the genus Tobamovirus, in addition to the fungal pathogen Botrytis cinerea reported earlier.

plant biology↗