Fine spectral tuning of a flavin-binding fluorescent protein for multicolor imaging

Nikolaev, A.; Yudenko, A.; Smolentseva, A.; Bogorodskiy, A.; Tsybrov, F.; Borshchevskiy, V.; Bukhalovich, S.; Nazarenko, V. V.; Kuznetsova, E.; Semenov, O.; Remeeva, A.; Gushchin, I.

doi:10.1101/2022.12.09.519645

bioRxiv · 10.1101/2022.12.09.519645

Fine spectral tuning of a flavin-binding fluorescent protein for multicolor imaging

Nikolaev, A.·Yudenko, A.·Smolentseva, A.·Bogorodskiy, A.·Tsybrov, F.·Borshchevskiy, V.·Bukhalovich, S.·Nazarenko, V. V.·Kuznetsova, E.·Semenov, O.·Remeeva, A.·Gushchin, I.

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Abstract

Flavin-binding fluorescent proteins (FbFPs) are promising genetically encoded tags for microscopy. However, spectral properties of their chromophores (riboflavin, flavin mononucleotide and flavin adenine dinucleotide) are notoriously similar even between different protein families, which limits applications of flavoproteins in multicolor imaging. Here, we present a palette of twenty-two finely tuned fluorescent tags based on the thermostable LOV domain from Chloroflexus aggregans (CagFbFP). We performed site saturation mutagenesis of three amino acid positions in the flavin-binding pocket, including the photoactive cysteine, to obtain variants with fluorescence emission maxima uniformly covering the wavelength range from 486 to 512 nm. We demonstrate three-color imaging based on spectral separation and two-color fluorescence lifetime imaging using the proteins from the palette. These results highlight the possibility of fine spectral tuning of flavoproteins and pave the way for further applications of FbFPs in fluorescence microscopy. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=110 SRC="FIGDIR/small/519645v1_ufig1.gif" ALT="Figure 1"> View larger version (26K): org.highwire.dtl.DTLVardef@786ee9org.highwire.dtl.DTLVardef@b99199org.highwire.dtl.DTLVardef@105e7aborg.highwire.dtl.DTLVardef@acbd50_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Nikolaev, A., Yudenko, A., Smolentseva, A., Bogorodskiy, A., Tsybrov, F., Borshchevskiy, V., Bukhalovich, S., Nazarenko, V. V., Kuznetsova, E., Semenov, O., Remeeva, A., Gushchin, I.. 2022-12-11. Fine spectral tuning of a flavin-binding fluorescent protein for multicolor imaging. https://doi.org/10.1101/2022.12.09.519645

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