Search bioRxiv⌕ Search

bioRxiv · 10.1101/2022.12.08.519683

Mathematical modeling of ion homeostasis & cell volume stabilization: impact of ion transporters, impermeant molecules, & Donnan effect

Abstract

The pump-leak mechanism (PLM) first, described by Tosteson and Hoffman (1960), demonstrates how the activity of the Na+ - K+ ATPase (NKA) can counteract the osmotic influx of water stimulated by the presence of impermeant intracellular molecules. We derive analytical solutions for the steady state ion concentrations, voltage, and volume of a cell, by including impermeant extracellular molecules, variable impermeant charge, and Cation-Chloride Co-transporters (CCC). We demonstrate that impermeant extracellular molecules could stabilize a cell without NKA activity but argue that it is unlikely to play a significant role in vivo. Significantly we have shown that the precise form of the NKA is unimportant for determining the steady state in PLMs. We have derived an analytical expression for the steady state of the PLM with one of the Cation-Chloride Co-transporters, either KCC, NCC, or NKCC, active. Notably, we have demonstrated that NCC at high pump rates can destabilize cells, which could account for the rarity of this co-transporter. In addition, we show that the reversal of any of the CCCs is unlikely. Importantly, we link the thermodynamics of the NKA to the PLM to show that there is a natural limit to the energy utilized by the PLM that prevents futile cycles. We show that the average charge on the intracellular impermeant molecules influences ion distributions but has no impact on energy utilization. Our study shows that analytical mathematical solutions from physically well-grounded models provide insight into ion transport systems that could only be obtained from numerical simulations with great difficulty. Significance StatementThe regulation of cell volume is fundamental to the stability of all tissue. Animal cells regulate their volume by actively pumping sodium and potassium ions, preventing the waters osmotic influx from blowing up the cell. Based on the physical laws that determine ion and water fluxes, we derive equations that allow one to predict how pump rates and ion conductances combine to stabilize cell volume. The action of the sodium pump consumes about 30% of a cells energy budget, and we demonstrate the rate of ion pumping is constrained so that cells do not consume excessive energy. Our work also demonstrates the power of closed-form mathematical equations in characterizing such pump-leak systems.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Aminzare, Z., Kay, A. R.. 2022-12-12. Mathematical modeling of ion homeostasis & cell volume stabilization: impact of ion transporters, impermeant molecules, & Donnan effect. https://doi.org/10.1101/2022.12.08.519683

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

IBD-Derived Colonic Fibroblasts Exhibit an Osteopontin-Enriched Secretome, and Osteopontin Restrains Human Colonic Organoid Maturation

Background: Intestinal fibroblasts are extensively remodeled in inflammatory bowel disease (IBD), yet the soluble stromal signals that directly influence epithelial maturation remain incompletely understood. We examined whether fibroblasts derived from inflamed IBD colon display an osteopontin (OPN; SPP1)-enriched secretory phenotype and whether extracellular OPN directly modifies non-neoplastic human colonic epithelium. Methods: Conditioned media from 5 noninflamed-associated fibroblast (NAF) and 4 inflammatory-associated fibroblast (IAF) cultures were analyzed in the validated multi-donor cytokine-array matrix, with orthogonal SPP1 RT-qPCR validation in a complementary fibroblast cohort. Recombinant OPN was then tested in human colonic organoids from 3 donors using donor-resolved molecular and functional analyses under standard, fibroblast-conditioned, and WNT-modified culture conditions. Donor identity defined biological replication. Results: OPN showed the strongest positive rank-based separation between IAF and NAF cultures: all 4 IAF values were higher than all 5 NAF values (Cliff's delta=1.00; exact Mann-Whitney P=0.0159; median ratio=3.64; Benjamini-Hochberg q=.19). Fibroblast RT-qPCR showed approximately 10-fold higher mean SPP1 expression in IAF than NAF cultures (P<.05). In organoids, OPN consistently reduced KRT20, FABP1, CA2, and MUC2 from Day 5 to Day 9. SOX9, HES1, and NOTCH1 increased at Day 9, whereas LGR5 and ALDH provided no evidence of canonical stem-cell expansion. Organoid-area and EdU responses were modest and donor dependent. Conclusions: IBD-derived colonic fibroblasts can display an OPN-enriched secretory phenotype. In human colonic organoids, OPN is sufficient to impair epithelial maturation, whereas its effects on growth and proliferation are variable and depend on the surrounding niche.

physiology↗

A multiscale analysis of liver lobule fibrosis and its impact on drug propagation and metabolism - a DLA approach

Employing DLA methods, this paper explores the self-assembly of collagen fibers and resulting fibrosis at three scales up to the scale of regular lobule models. This allows a mechanistic exploration of the effects of collagen on drug transport (flow and diffusion) and metabolism. In addition, this method permits an analysis of fiber growth characteristics. First, variations of the DLA method of Parkinson et al (1994) will be used to generate multiple explicit collagen microfibril self-assembly using DLA particles in one dimension using cubic grid blocks of (4 mm)3 in a 240 x 20 x 20 grid model. The second stage will be to assess the consequences of various densities of these fibers in three dimensions on flow reductions at a higher scale. Here we utilize DLA methods in cubic grid blocks of (80 nm)3 to mimic 3D collagen self-assembly of fibrils. We then apply a pressure gradient or specified flow rates across a spatially gridded version of these models to quantify flow effects. This region represents a local zone of liver tissue affected by fibrosis. Analytic models of fibrotic effects on flow are employed for comparison. A third stage explores the implications of fibrosis in a liver lobule model using multiple grid blocks of size 3200 mm to represent the lobule tissue. Here, a continuum model of fiber density is employed, based on the previous two scales. The model also includes the effects of additional grid blocks representing sinusoidal flow paths found in the lobule. We contrast and quantify drug propagation and metabolism of molecular dissolved versus nanoparticle delivery vehicles in fibrotic media, achieved by upscaling explicit collagen distributions to appropriate average values.

physiology↗

Pulmonary pressure load shapes right ventricular molecular remodelling in dilated cardiomyopathy

Right ventricular (RV) adaptation to pulmonary hypertension determines outcome in dilated cardiomyopathy (DCM), but the molecular mechanisms of the transition to decompensation remain unclear. We analysed RV tissue from explanted hearts of patients with end-stage DCM using single-nucleus RNA sequencing (n=21), mass spectrometry and Olink Reveal proteomics (both n=44), and integrated these molecular profiles with echocardiographic and right-heart catheterisation measures to identify molecular correlates of RV dysfunction. Mean pulmonary arterial pressure was the dominant correlate of RV transcriptional remodelling, particularly in cardiomyocytes, where higher pressure was associated with contractile remodelling, autophagy, vesicle trafficking and glucose metabolism. In contrast, RV decompensation was characterised by immune activation and reduced oxidative phosphorylation exclusively at the proteomic level. Integrative multi-omics factor analysis (MOFA) further identified fibrosis as the dominant molecular program shared across transcriptomic and proteomic layers. Together, these findings indicate molecular adaptation to pressure load and tissue fibrosis during progression towards RV failure.

physiology↗