Transcriptional profiling of rare acantholytic disorders suggests common mechanisms of pathogenesis

Roth-Carter, Q. R.; Burks, H. E.; Ren, Z.; Koetsier, J. L.; Tsoi, L. C.; Harms, P. W.; Xing, X.; Kirma, J.; Harmon, R. M.; Godsel, L. M.; Perl, A. L.; Gudjonsson, J. E.; Green, K. J.

doi:10.1101/2022.12.02.518412

bioRxiv · 10.1101/2022.12.02.518412

Transcriptional profiling of rare acantholytic disorders suggests common mechanisms of pathogenesis

Roth-Carter, Q. R.·Burks, H. E.·Ren, Z.·Koetsier, J. L.·Tsoi, L. C.·Harms, P. W.·Xing, X.·Kirma, J.·Harmon, R. M.·Godsel, L. M.·Perl, A. L.·Gudjonsson, J. E.·Green, K. J.

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Abstract

BackgroundDarier, Hailey-Hailey, and Grovers diseases are rare non-autoimmune acantholytic skin diseases. While these diseases have different underlying causes, they share defects in cell-cell adhesion in the epidermis and desmosome organization. ObjectiveTo better understand the underlying mechanisms leading to disease in these conditions we performed RNA-seq on lesional skin samples from Darier, Hailey-Hailey, and Grovers disease patients. MethodsRNA-seq and bioinformatics analyses were performed on banked paraffin embedded diagnostic samples from each disease. For detailed Methods, please see the Methods section in this articles Online Repository at www.jacionline.org. ResultsThe transcriptomic profiles of Darier, Hailey-Hailey, and Grovers disease were found to share a remarkable overlap, which did not extend to other common inflammatory skin diseases, psoriasis and atopic dermatitis. Analysis of enriched pathways showed a shared upregulation in keratinocyte differentiation and Th17 inflammatory pathways, and a decrease in cell adhesion and actin organization pathways in Darier, Hailey-Hailey, and Grovers disease. Direct comparison to atopic dermatitis and psoriasis showed that the downregulation in actin organization pathways was a unique feature in Darier, Hailey-Hailey, and Grovers disease. Further, upstream regulator analysis suggests that a decrease in SRF/MRTF activity may be responsible for the downregulation of actin organization pathways. Staining for MRTFA in lesional skin samples showed a decrease in nuclear MRTFA in patient skin compared to normal skin. ConclusionThese findings highlight the significant level of similarity in the transcriptome of Darier, Hailey-Hailey, and Grovers disease, and identify decreases in actin organization pathways as a unique signature present in these conditions. Key MessagesO_LIDarier Disease, Hailey-Hailey Disease, and Grovers Disease share similar transcriptional profiles suggesting common mechanisms of pathogenesis. C_LIO_LISRF/MRTFA activity is reduced in Darier Disease, Hailey-Hailey Disease and Grovers disease, implicating actin organization in acantholysis. C_LI

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Roth-Carter, Q. R., Burks, H. E., Ren, Z., Koetsier, J. L., Tsoi, L. C., Harms, P. W., Xing, X., Kirma, J., Harmon, R. M., Godsel, L. M., Perl, A. L., Gudjonsson, J. E., Green, K. J.. 2022-12-03. Transcriptional profiling of rare acantholytic disorders suggests common mechanisms of pathogenesis. https://doi.org/10.1101/2022.12.02.518412

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