Dynamics of methane cycling microbiome during methane flux hot moments from riparian buffer systems

Obregon, D.; Mafa-Attoye, T.; Baskerville, M.; Mitter, E.; Fonseca de Souza, L.; Oelbermann, M.; Thevathasan, N.; Tsai, S. M.; Dunfield, K. E.

doi:10.1101/2022.11.24.517857

bioRxiv · 10.1101/2022.11.24.517857

Dynamics of methane cycling microbiome during methane flux hot moments from riparian buffer systems

Obregon, D.·Mafa-Attoye, T.·Baskerville, M.·Mitter, E.·Fonseca de Souza, L.·Oelbermann, M.·Thevathasan, N.·Tsai, S. M.·Dunfield, K. E.

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Abstract

Riparian buffer systems (RBS) are a common agroforestry practice that consists of keeping a forested boundary adjacent to water bodies in agricultural landscapes, thus helping to protect aquatic ecosystems from adverse impacts. Nevertheless, despite the multiple benefits they provide, RBSs can be hotspots of methane emissions since abundant organic carbon and high-water tables are often found in these soils. In southern Ontario, Canada, the rehabilitation of Washington Creeks streambank occurred in 1985. In a recent study, methane (CH4) fluxes were measured biweekly for two years (2017-2018) in four different vegetative riparian areas alongside Washington creek: a rehabilitated tree buffer (RH), a grassed buffer (GRB), an undisturbed deciduous forest (UNF), an undisturbed coniferous forest (CF), and an adjacent agricultural field (AGR) for comparison. Based on methane fluxes in 2018 and hot moments identified, we selected two dates from summer (July 04 and August 15) and use soil sampling from those days to assess the CH4 cycling microbial communities in these RBS. We used qPCR and high-throughput sequencing from both DNA and cDNA to measure the diversity and activity of the methanogen and methanotroph communities. Methanogens were abundant in all riparian soils, including the archaeal genera Methanosaeta, Methanosarcina, Methanomassiliicoccus Methanoreggula, but they were mostly active in UNF soils. Among methanotrophs, Methylocystis was the most abundant taxon in all the riparian sites, except for AGR soils where the methanotrophs community mostly comprised members of rice paddy clusters (RPCs and RPC-1) and upland soil clusters (TUSC and USC). In summary, these results indicate that differences in CH4 fluxes between RBS at Washington creek are influenced by differences in the presence and activity of methanogens, which were higher in the deciduous forest (UNF) soils during hot moments CH4 flux, likely due to high water content in that soils. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=171 SRC="FIGDIR/small/517857v1_ufig1.gif" ALT="Figure 1"> View larger version (64K): org.highwire.dtl.DTLVardef@1dcde21org.highwire.dtl.DTLVardef@17b59e5org.highwire.dtl.DTLVardef@14adfb0org.highwire.dtl.DTLVardef@a3b411_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Obregon, D., Mafa-Attoye, T., Baskerville, M., Mitter, E., Fonseca de Souza, L., Oelbermann, M., Thevathasan, N., Tsai, S. M., Dunfield, K. E.. 2022-11-24. Dynamics of methane cycling microbiome during methane flux hot moments from riparian buffer systems. https://doi.org/10.1101/2022.11.24.517857

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