HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion

Lin, J. Q.; Khuperkar, D.; Pavlou, S.; Makarchuk, S.; Patikas, N.; Lee, F. C. Y.; Kang, J.; Field, S. F.; Zbiegly, J. M.; Freeman, J. L.; Ule, J.; Metzakopian, E.; Ruepp, M.-D.; Mallucci, G. R.

doi:10.1101/2022.10.27.514062

bioRxiv · 10.1101/2022.10.27.514062

HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion

Lin, J. Q.·Khuperkar, D.·Pavlou, S.·Makarchuk, S.·Patikas, N.·Lee, F. C. Y.·Kang, J.·Field, S. F.·Zbiegly, J. M.·Freeman, J. L.·Ule, J.·Metzakopian, E.·Ruepp, M.-D.·Mallucci, G. R.

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Abstract

Enhanced expression of the cold-shock protein RNA binding motif 3 (RBM3) is highly neuroprotective both in vitro and in vivo. Whilst upstream signalling pathways leading to RBM3 expression have been described, the precise molecular mechanism of RBM3 induction during cooling remains elusive. To identify temperature-dependent modulators of RBM3, we performed a genome-wide CRISPR-Cas9 knockout screen using RBM3-reporter human iPSC-derived neurons. We found that RBM3 mRNA and protein levels are robustly regulated by several splicing factors, with heterogeneous nuclear ribonucleoprotein H1 (HNRNPH1) being the strongest positive regulator. Splicing analysis revealed that moderate hypothermia significantly represses the inclusion of a poison exon, which, when retained, targets the mRNA for nonsense-mediated decay. Importantly, we show that HNRNPH1 mediates this cold-dependent exon skipping via its interaction with a G-rich motif within the poison exon. Our study provides novel mechanistic insights into the regulation of RBM3 and provides further targets for neuroprotective therapeutic strategies. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/514062v1_ufig1.gif" ALT="Figure 1"> View larger version (52K): org.highwire.dtl.DTLVardef@ef0a5org.highwire.dtl.DTLVardef@d907a5org.highwire.dtl.DTLVardef@85176aorg.highwire.dtl.DTLVardef@1c4306a_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Lin, J. Q., Khuperkar, D., Pavlou, S., Makarchuk, S., Patikas, N., Lee, F. C. Y., Kang, J., Field, S. F., Zbiegly, J. M., Freeman, J. L., Ule, J., Metzakopian, E., Ruepp, M.-D., Mallucci, G. R.. 2022-10-27. HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion. https://doi.org/10.1101/2022.10.27.514062

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