Search bioRxiv⌕ Search
Home/Archive/bioRxiv

bioRxiv · 10.1101/2022.10.02.510494

The black goby Gobius niger Linnaeus, 1758 in the Marchica lagoon (Alboran Sea, Morocco): Ecological traits and site-related footprint

Lamkhalkhal, A.·Selfati, M.·Rahmouni, I.·Kaddouri, N.·Badaoui, B.·pariselle, A.·Benhoussa, A.·Kmentova, N.·Vanhove, M. P. M.·Bazairi, H.
View original source ↗Export metadata ↓

Abstract

Fishes belonging to Gobiidae are well represented in the Marchica lagoon on the Moroccan Mediterranean coast, both in terms of species richness and abundance, with the black goby, Gobius niger Linnaeus, 1758, being the dominant species. The present study aims to examine (1) the spatial and temporal distribution of Gobius niger and its environmental drivers in the lagoon and (2) the potential lagoon-related footprint using morphometric, genetic and parasitological proxies. Systematic monthly sampling covering the whole lagoon basin performed between October 2015 and September 2016 revealed year-long presence of G. niger throughout the lagoon with significantly low densities in winter. The higher abundances were recorded in the shallow bottoms of the lagoon inner margins on a variety of substrates (mud, muddy-sand, sandy-mud and fine sand) mostly covered by macroalgae and/or seagrass meadows. Depth, that has to be seen as a variable that acts in concert with other factors such as temperature, vegetation cover and sediment as the Mean Grain Size, seems to be the most important predictor, explaining the distribution of G. niger in the lagoon, with a trend of increasing abundance towards shallower stations. Comparison of black goby populations from the Marchica lagoon with their counterparts from the adjacent Mediterranean coast of Morocco revealed that specimens caught at sea are of a bigger size compared to the lagoon population. Of the 180 gobies investigated, not a single one hosted the parasites we targeted in the parasitological approach, monogenean flatworms. The absence of population structuring, low genetic diversity and presence of common haplotypes indicate no apparent restriction in the gene flow between the two populations. Therefore, the observed morphometric differences seem to be due to the external environmental conditions rather than genetic differences. Gobius niger plays a key eco-trophic role by providing a link between benthic invertebrates and large predators. The shallow beds of the lagoon, where the species is abundant, are key habitats in the Marchica lagoon and need to be considered in all management plans aiming at the conservation of biodiversity and ecological processes.

Explore related subjects

ecologyPreprint

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Lamkhalkhal, A., Selfati, M., Rahmouni, I., Kaddouri, N., Badaoui, B., pariselle, A., Benhoussa, A., Kmentova, N., Vanhove, M. P. M., Bazairi, H.. 2022-10-03. The black goby Gobius niger Linnaeus, 1758 in the Marchica lagoon (Alboran Sea, Morocco): Ecological traits and site-related footprint. https://doi.org/10.1101/2022.10.02.510494

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

bioRxiv2026

Operationalising the context in regenerative agriculture: decision-making and farm variability

Soil degradation is a widespread challenge that requires a broad response at the individual farm level. To ensure effectivity, the practices should be tailored to the farm context: land manager objectives and farm specific challenges. These have however been difficult to quantify. Here we demonstrate that a workable farm context can be created based on a value survey, open satellite and soil data, and published models for vegetation gross primary productivity and soil erosion. Based on the findings, despite individual differences, farmers value profitability and operational efficiency, but also biodiversity and soil health. At least the regenerative farmers surveyed also value working for the greater good more than maintaining tradition or power. In spite of wide differences in farm production orientation, we also found that each farm also had a broad variation in individual fields GPP. Most fields have a stable GPP level, which is either high or low, and that there is a 2-3-fold difference between the weakest and best producing fields indicating the potential for improving GPP by improving the growing conditions on currently weak fields. In addition, soil loss was found to be highly concentrated in critical source areas, where 10% of the field area contributed to 50% of the soil loss. Overall, open data can be linked to modelling workflows to rapidly produce a decision-making context for farmers. This facilitates benchmarking and co-learning as well as enables land managers and advisors to identify the farm context for planning effective responses to soil degradation.

ecology↗
bioRxiv2026

Fly, land, listen: Autonomous intermittent locomotion enables scalable low-noise drone ecoacoustic surveys

Ecoacoustic monitoring is enabling scientists and land managers to monitor and manage biodiversity more effectively and cost-efficiently in the face of human pressures and rapidly changing climates. Currently, most ecoacoustic surveys use manually deployed static sensors to record data, limiting the scale and reach of surveying efforts. Here we present a proof-of-concept autonomous drone platform that can use intermittent locomotion to conduct ecoacoustic surveys using an onboard sensor. Our custom prototype is able to fly, navigate, and avoid obstacles autonomously, land at a pre-determined location, record audio from an onboard microphone whilst static, before taking off and moving to the next sampling site. Autonomous navigation and operation enable greater sampling flexibility, reach, and scalability. Furthermore, by recording audio only whilst landed, noise from the drone's rotors does not mask signals or disturb animals, simplifying signal processing and downstream ecological analyses. We conducted trials in a scrubland habitat at the Knepp Estate in West Sussex, where our prototype demonstrated successful autonomous navigation and obstacle avoidance. Furthermore, we found that avian biodiversity data collected from the drone platform was comparable to that from traditional static acoustic sensor deployments, and that vocalisation patterns were not significantly impacted by the noise of the drone arriving or leaving a site. While scaled deployments of our technology would require further technical and regulatory challenges to be solved, our first demonstration of autonomous intermittent robotics-assisted ecoacoustic surveys lays the foundations for more cost-effective and far-reaching biodiversity surveys, with transformative potential for conservation, agricultural management, biosecurity, and more.

ecology↗
bioRxiv2026

Do higher-order moments improve inference of population dynamics?

Fitting mathematical models of population dynamics to microbial time-series data allows us to estimate the ecological processes and interactions taking place in the microbiome. Repeated experiments of microbial systems yield replicates which slightly differ from each other. Some of this variability arises due to the fact that births and deaths occur at random. Most prior work focuses on fitting a deterministic mathematical model to the average across replicates. We use a stochastic model to fit the variability to the observed variability across replicates. Using a simulation-driven approach, we study the conditions under which our approach allows us to infer a larger fraction of ecological parameters correctly. We observe a substantial improvement in parameter inference. Lastly, our Bayesian approach not only allows us to incorporate prior information about the system, but also provides a distribution of parameters which conveys some idea of the uncertainty of the estimates.

ecology↗