Imaging through Windansee electrode arrays reveals a small fraction of local neurons following surface MUA

Thunemann, M.; Hossain, L.; Ness, T. V.; Rogers, N.; Lee, K.; Lee, S.-H.; Kılıc, K.; Oh, H.; Economo, M. N.; Gilja, V.; Einevoll, G.; Dayeh, S.; Devor, A.

doi:10.1101/2022.09.01.506113

bioRxiv · 10.1101/2022.09.01.506113

Imaging through Windansee electrode arrays reveals a small fraction of local neurons following surface MUA

Thunemann, M.·Hossain, L.·Ness, T. V.·Rogers, N.·Lee, K.·Lee, S.-H.·Kılıc, K.·Oh, H.·Economo, M. N.·Gilja, V.·Einevoll, G.·Dayeh, S.·Devor, A.

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Abstract

Prior studies have shown that neuronal spikes can be recorded with microelectrode arrays placed on the cortical surface. However, the etiology of these spikes remains unclear. Because the top cortical layer (layer 1) contains very few neuronal cell bodies, it has been proposed that these spikes originate from neurons with cell bodies in layer 2. To address this question, we combined two-photon calcium imaging with electrophysiological recordings from the cortical surface in awake mice using chronically implanted PEDOT:PSS electrode arrays on transparent parylene C substrate. Our electrode arrays (termed Windansee) were integrated with cortical windows offering see-through optical access while also providing measurements of local field potentials (LFP) and multiunit activity (MUA) from the cortical surface. To enable longitudinal data acquisition, we have developed a mechanical solution for installation, connectorization, and protection of Windansee devices aiming for an unhindered access for high numerical aperture microscope objectives and a lifetime of several months while worn by a mouse. Contrary to the common notion, our measurements revealed that only a small fraction of layer 2 neurons from the sampled pool (~13%) faithfully followed MUA recorded from the surface above the imaging field-of-view. Surprised by this result, we turned to computational modeling for an alternative explanation of the MUA signal. Using realistic modeling of neurons with back-propagating dendritic properties, we computed the extracellular action potential at the cortical surface due to firing of local cortical neurons and compared the result to that due to axonal inputs to layer 1. Assuming the literature values for the cell/axon density and firing rates, our modeling results show that surface MUA due to axonal inputs is over an order of magnitude larger than that due to firing of layer 2 pyramidal neurons. Thus, a combination of surface MUA recordings with two-photon calcium imaging can provide complementary information about the input to a cortical column and the local circuit response. Cortical layer I plays an important role in integration of a broad range of cortico-cortical, thalamocortical and neuromodulatory inputs. Therefore, detecting their activity as MUA while combining electrode recording with two-photon imaging using optically transparent surface electrode arrays would facilitate studies of the input/output relationship in cortical circuits, inform computational circuit models, and improve the accuracy of the next generation brain-machine interfaces.

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Thunemann, M., Hossain, L., Ness, T. V., Rogers, N., Lee, K., Lee, S.-H., Kılıc, K., Oh, H., Economo, M. N., Gilja, V., Einevoll, G., Dayeh, S., Devor, A.. 2022-09-03. Imaging through Windansee electrode arrays reveals a small fraction of local neurons following surface MUA. https://doi.org/10.1101/2022.09.01.506113

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