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bioRxiv · 10.1101/2022.07.19.500583

OpenGenomeBrowser: A versatile, dataset-independent and scalable web platform for genome data management and comparative genomics

Roder, T.·Oberhänsli, S.·Shani, N.·Bruggmann, R.
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Abstract

OpenGenomeBrowser is a self-hostable open-source platform that manages access to genomic data and drastically simplifies comparative genomics analyses. It enables users to interactively generate phylogenetic trees, compare gene loci, browse biochemical pathways, perform gene trait matching, create dot plots, execute BLAST searches, and access the data. It features a flexible user management system, and its modular folder structure enables the organization of genomic data and metadata, and to automate analyses. We tested OpenGenomeBrowser with bacterial, archaeal and yeast genomes. The largest instance currently contains over 1,400 bacterial genomes. Source code, documentation, tutorials and a demo server are available at opengenomebrowser.github.io.

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Roder, T., Oberhänsli, S., Shani, N., Bruggmann, R.. 2022-07-20. OpenGenomeBrowser: A versatile, dataset-independent and scalable web platform for genome data management and comparative genomics. https://doi.org/10.1101/2022.07.19.500583

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