NeuVue: A Framework and Workflows for High-Throughput Electron Microscopy Connectomics Proofreading

Xenes, D.; Kitchell, L. M.; Rivlin, P. K.; Brodsky, R.; Gooden, H.; Joyce, J.; Luna, D.; Norman-Tenazas, R.; Ramsden, D.; Romero, K.; Rose, V.; Villafane-Delgado, M.; Gray-Roncal, W.; Wester, B.

doi:10.1101/2022.07.18.500521

bioRxiv · 10.1101/2022.07.18.500521

NeuVue: A Framework and Workflows for High-Throughput Electron Microscopy Connectomics Proofreading

Xenes, D.·Kitchell, L. M.·Rivlin, P. K.·Brodsky, R.·Gooden, H.·Joyce, J.·Luna, D.·Norman-Tenazas, R.·Ramsden, D.·Romero, K.·Rose, V.·Villafane-Delgado, M.·Gray-Roncal, W.·Wester, B.

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Abstract

Connectomic reconstruction from large image volumes produces segmentation and synaptic-assignment errors that must be resolved to support downstream analyses. As datasets have grown larger and teams more distributed, proofreading has become a critical operational bottleneck. Workflows for proofreading and error correction have not scaled commensurately with connectomic data production and may not accommodate heterogeneous proofreader expertise and machine-generated candidate edits. New tools are therefore needed to organize, prioritize, and coordinate proofreading at volume scale. Here we present NeuVue, a task-management and prioritization framework that operationalizes proofreading through atomic, auditable tasks for individual and team review, multistage routing across proofreader cohorts, performance and volume-state tracking, and integration with community annotation, visualization, and analysis services. We report the use of NeuVue across two volumetric datasets, supporting scalable proofreading by over forty proofreaders and producing over fifty thousand edits. NeuVue provides a reproducible human-in-the-loop framework for generating, validating, and maintaining large connectomic datasets.

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Xenes, D., Kitchell, L. M., Rivlin, P. K., Brodsky, R., Gooden, H., Joyce, J., Luna, D., Norman-Tenazas, R., Ramsden, D., Romero, K., Rose, V., Villafane-Delgado, M., Gray-Roncal, W., Wester, B.. 2022-07-20. NeuVue: A Framework and Workflows for High-Throughput Electron Microscopy Connectomics Proofreading. https://doi.org/10.1101/2022.07.18.500521

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