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bioRxiv · 10.1101/2022.06.24.497566

PhysiCell training apps: Cloud hosted open-source apps to learn cell-based simulation software

Sundus, A.·Kurtoglu, F.·Konstantinopoulos, K.·Chen, M.·Willis, D.·Heiland, R.·Macklin, P.
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Abstract

Cell-based tissue simulations require not only the ability to write new code in a simulation framework, but also an understanding of underlying mathematical models, background biology, and parameters for each behavior of an agent. This can entail a steep learning curve for interdisciplinary researchers joining computational biology research. We have created a suite of cloud-hosted open-source tools to separately explore and learn key components of an agent-based cellular simulation framework. This creates an self-contained environment to learn and test functions of cells and the micro-environment in a modular fashion before creating more detailed, research-focused simulation models.

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Sundus, A., Kurtoglu, F., Konstantinopoulos, K., Chen, M., Willis, D., Heiland, R., Macklin, P.. 2022-06-28. PhysiCell training apps: Cloud hosted open-source apps to learn cell-based simulation software. https://doi.org/10.1101/2022.06.24.497566

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