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bioRxiv · 10.1101/2022.03.09.483700

MitoSearch: Construction of fish species composition database with environmental DNA using public databases

Ito, T.·Mizobata, H.·Yoshitake, K.·Kinoshita, S.·Asakawa, S.
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Abstract

Existing fish species distribution databases have the following problems: the possibility of species identification errors due to plasticity of morphological characteristics, the impossibility of quantitative composition, and the difficulty of geographically and time-series integrated interpretation. To solve the above problems, we constructed MitoSearch database. It is a fish species distribution database using 2,160 samples of variable regions of 12S rRNA genes amplified by MiFish primers registered at NCBI/EBI/DDBJ, and visualizes the fish species composition data on a map. By integrating a large amount of data registered in public databases, MitoSearch was aimed to provide the comprehensive understanding of spatial and temporal distribution of organisms on a global scale.

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Ito, T., Mizobata, H., Yoshitake, K., Kinoshita, S., Asakawa, S.. 2022-03-12. MitoSearch: Construction of fish species composition database with environmental DNA using public databases. https://doi.org/10.1101/2022.03.09.483700

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