Acinetobase: the comprehensive database and repository of Acinetobacter strains.

Valcek, A.; Collier, J.; Botzki, A.; Van der Henst, C.

doi:10.1101/2022.02.27.482141

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bioRxiv · 10.1101/2022.02.27.482141

Acinetobase: the comprehensive database and repository of Acinetobacter strains.

Valcek, A.·Collier, J.·Botzki, A.·Van der Henst, C.

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Abstract

BackgroundAcinetobacter baumannii is one of the most problematic nosocomial pathogens that can efficiently thrive within hospital settings, mainly due to resistances towards antibiotics, desiccation, disinfectants, human serum and oxidative stress. Recently, increased resistance against last resort antibiotics earns this bacterium the highest priority concern classified by the CDC and the WHO. An obvious hallmark of this bacterium is the high heterogeneity observed amongst A. baumannii isolates, with a limited core genome. This feature complexifies the study of A. baumannii bacteria as an entity, subsequently reflected in a diversity of phenotypes of not only antimicrobial and environmental resistance but also virulence. Main bodyHigh degree of genome plasticity, along with the use of a limited subset of established reference strains, can lead to strain-specific observations, decreasing the global understanding of this pathogenic agent. Phenotypic variability of A. baumannii strains is easily observable such as with the macrocolony morphologies, in vitro and in vivo virulence, natural competence level, production of different capsular polysaccharide structures and cellular densities. Some strains encode an extensive amount of virulence factors while other, including the reference strains, lack several key ones. The lack/excess of genes or specific physiological processes might interfere with in vivo and in vitro experiments, thus providing limited impact on the global understanding of Acinetobacter bacteria as a whole. ConclusionAs an answer to the high heterogeneity amongst A. baumannii strains, we propose a first comprehensive database that includes the bacterial strains and the associated phenotypic and genetic data. This new repository, freely accessible to the entire scientific community, allow selecting the best bacterial isolate(s) related to any biological question, using an efficient and fast exchange platform.

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Valcek, A., Collier, J., Botzki, A., Van der Henst, C.. 2022-03-01. Acinetobase: the comprehensive database and repository of Acinetobacter strains.. https://doi.org/10.1101/2022.02.27.482141

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