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bioRxiv · 10.1101/2022.01.26.477748

Power analysis for spatial omics

Baker, E. A. G.·Schapiro, D.·Dumitrascu, B.·Vickovic, S.·Regev, A.
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Abstract

As spatially-resolved multiplex profiling of RNA and proteins becomes more prominent, it is increasingly important to understand the statistical power available to test specific hypotheses when designing and interpreting such experiments. Ideally, it would be possible to create an oracle that predicts sampling requirements for generalized spatial experiments. However, the unknown number of relevant spatial features and the complexity of spatial data analysis makes this challenging. Here, we enumerate multiple parameters of interest that should be considered in the design of a properly powered spatial omics. We introduce a method for tunable in silico tissue generation, and use it with spatial profiling datasets to construct an exploratory computational framework for single cell spatial power analysis. Finally, we demonstrate that our framework can be applied across diverse spatial data modalities and tissues of interest.

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Baker, E. A. G., Schapiro, D., Dumitrascu, B., Vickovic, S., Regev, A.. 2022-01-28. Power analysis for spatial omics. https://doi.org/10.1101/2022.01.26.477748

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