A new demethylase gene OsDML4 involved in high temperature induced floury endosperm formation in rice

Yan, Y.; Li, C.; Liu, Z.; Zhuang, J.-J.; Kong, J.-R.; Yang, Z.-K.; Yu, J.; Alam, M. S.; Ruan, C.-C.; Zhang, H.-M.; Xu, J.-H.

doi:10.1101/2022.01.20.477110

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bioRxiv · 10.1101/2022.01.20.477110

A new demethylase gene OsDML4 involved in high temperature induced floury endosperm formation in rice

Yan, Y.·Li, C.·Liu, Z.·Zhuang, J.-J.·Kong, J.-R.·Yang, Z.-K.·Yu, J.·Alam, M. S.·Ruan, C.-C.·Zhang, H.-M.·Xu, J.-H.

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Abstract

High temperature (HT) can affect the accumulation of seed storage materials and cause adverse effects on the yield and quality in rice. DNA methylation plays an important role in plant growth and development. However, the temperature and DNA methylation interaction on rice seed development has not been studied yet. Here, we identified a new demethylase gene OsDML4 and discovered its function on cytosine demethylation to affect the endosperm formation during the grain filling. Knockout of OsDML4 induced floury endosperm only under HT, which resulted from dramatically reduced the transcription and accumulation of glutelins and 16-kDa prolamin. The expression of two important transcription factors RISBZ1 and RPBF was significantly declined in the osdml4 mutants. The absence of OsDML4 also caused adverse effects on the formation of protein bodies (PBs), the number of PB-II was greatly decreased and incomplete PB-II with empty space and abnormally shaped PB-II were observed in the osdml4 mutants. Whole-genome bisulfite sequencing analysis of seeds at 15 days after pollination revealed much higher global methylation levels of CG, CHG and CHH contexts in the osdml4 mutants compared to wild type (WT). Moreover, the methylation status of RISBZ1 promoter was hypermethylated but RPBF promoter was nearly unchanged. No significant difference was detected between WT and the osdml4 mutants under room temperature. In conclusion, our study demonstrates a novel OsDML4-mediated epigenetic regulatory mechanism involving in the formation of floury endosperm, which will provide a new perspective in regulating endosperm development and the accumulation of SSPs in rice.

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Yan, Y., Li, C., Liu, Z., Zhuang, J.-J., Kong, J.-R., Yang, Z.-K., Yu, J., Alam, M. S., Ruan, C.-C., Zhang, H.-M., Xu, J.-H.. 2022-01-22. A new demethylase gene OsDML4 involved in high temperature induced floury endosperm formation in rice. https://doi.org/10.1101/2022.01.20.477110

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