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bioRxiv · 10.1101/2021.12.28.474379

FastCAT accelerates absolute quantification of proteins by using multiple short non-purified chimeric standards

Rzagalinski, I.·Bogdanova, A.·Raghuraman, B. K.·Geertsma, E. R.·Hersemann, L.·Ziemssen, T.·Shevchenko, A.
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Abstract

Absolute (molar) quantification of clinically relevant proteins determines their reference values in liquid and solid biopsies. FastCAT (for Fast-track QconCAT) method employs multiple short (<50 kDa) stable-isotope labeled chimeric proteins (CPs) composed of concatenated quantotypic (Q-) peptides representing the quantified proteins. Each CP also comprises scrambled sequences of reference (R-) peptides that relate its abundance to a single protein standard (BSA). FastCAT not only alleviates the need in purifying CP or using SDS-PAGE, but also improves the accuracy, precision and dynamic range of the absolute quantification by grouping Q-peptides according to the expected abundance of target proteins. We benchmarked FastCAT against the reference method of MS Western and tested it in the direct molar quantification of neurological markers in the human cerebrospinal fluid at the low ng/mL level.

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Rzagalinski, I., Bogdanova, A., Raghuraman, B. K., Geertsma, E. R., Hersemann, L., Ziemssen, T., Shevchenko, A.. 2021-12-29. FastCAT accelerates absolute quantification of proteins by using multiple short non-purified chimeric standards. https://doi.org/10.1101/2021.12.28.474379

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