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bioRxiv · 10.1101/2021.12.13.472497

A Multiscale computational model of YAP signaling in epithelial fingering behaviour

Mukhtar, N.·Edelstein-Keshet, L.·Cytrynbaum, E. N.
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Abstract

In epithelial-mesenchymal transition (EMT), cells organized into sheets break away and become motile mesenchymal cells. EMT plays a crucial role in wound healing, embryonic development, and cancer metastasis. Intracellular signaling in response to mechanical, topographic, or chemical stimuli can promote EMT. We present a multiscale model for EMT downstream of the protein YAP, which suppresses the cell-cell adhesion protein E-cadherin and activates the GTPase Rac1 that enhances cell migration. We first propose an ODE model for YAP/Rac1/E-cadherin interactions. The model dynamics are bistable, accounting for motile loose cells as for adherent slower cells. We implement this model in a cellular Potts model simulation of 2D wound-healing using the open source platform Morpheus. We show that, under suitable stimuli (depicting topographic cues) the sheet exhibits finger-like projections and EMT. Morphological, as well as quantitative differences in YAP levels as well as cell speed across the sheet are consistent with preexisting experimental observations of epithelial sheets grown on topographic features in vitro. The simulation is also consistent with experiments that knockdown or over-express YAP, inhibit Rac1, or block E-cadherin. SIGNIFICANCEIn normal wound-healing, cell in an epithelium divide, grow, and migrate so as to seal a gap. In some pathological states, epithelial-mesenchymal transition (EMT) can lead to abnormal morphology, including fingering, breakage of single cells or multicellular clusters from the sheet edge. The mechanochemical control of this behaviour by cell signaling circuits (YAP, Rac1, and E-cadherin) reveals how the competition between cell adhesion and cell migration contributes to the process. We use the open-source computational platform Morpheus to investigate a multiscale model for the interactions of the proteins inside cells and the resulting morphology of the cell sheet. Results are consistent with experimental results in the literature.

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Mukhtar, N., Edelstein-Keshet, L., Cytrynbaum, E. N.. 2021-12-14. A Multiscale computational model of YAP signaling in epithelial fingering behaviour. https://doi.org/10.1101/2021.12.13.472497

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