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bioRxiv · 10.1101/2021.11.15.468716

Rigid DNA nanotube tethers suppress high frequency noise in dual-trap optical tweezers systems

Shaw, A.·Satija, R.·De la Matta, E. A. d. M.·Marqusee, S.·Bustamante, C.
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Abstract

Dual trap optical tweezers are a powerful tool to trap and characterize the biophysical properties of single biomolecules such as the folding pathways of proteins and nucleic acids, and the chemomechanical activity of molecular motors. Despite its vastly successful application, noise from drift and fluctuation of the optics, and Brownian motion of the trapped beads still hinder the techniques ability to directly visualize folding of small biomolecules or the single nucleotide stepping of polymerases, especially at low forces (<10 pN) and sub-millisecond timescales. Rigid DNA nanotubes have been used to replace the conventional dsDNA linker to reduce optical tweezers noise in the low force range. However, optical tweezers are used to study a wide range of biophysical events, with timescales ranging from microseconds to seconds, and length changes ranging from sub nanometers to tens of nanometers. In this study, we systematically evaluate how noise is distributed across different frequencies in dual trap optical tweezers systems-and show that rigid DNA nanotube tethers suppress only high frequency noise (kHz), while the low frequency noise remains the same when compared to that of dsDNA tethers.

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Shaw, A., Satija, R., De la Matta, E. A. d. M., Marqusee, S., Bustamante, C.. 2021-11-16. Rigid DNA nanotube tethers suppress high frequency noise in dual-trap optical tweezers systems. https://doi.org/10.1101/2021.11.15.468716

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