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bioRxiv · 10.1101/2021.10.06.463354

Application of machine learning methods in clinical trials for precision medicine

Wang, Y.·Carter, B. Z.·Li, Z.·Huang, X.
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Abstract

ObjectiveA key component for precision medicine is a good prediction algorithm for patients response to treatments. We aim to implement machine learning (ML) algorithms into the response-adaptive randomization (RAR) design and improve the treatment outcomes. Materials and MethodsWe incorporated nine ML algorithms to model the relationship of patient responses and biomarkers in clinical trial design. Such a model predicted the response rate of each treatment for each new patient and provide guidance for treatment assignment. Realizing that no single method may fit all trials well, we also built an ensemble of these nine methods. We evaluated their performance through quantifying the benefits for trial participants, such as the overall response rate and the percentage of patients who receive their optimal treatments. ResultsSimulation studies showed that the adoption of ML methods resulted in more personalized optimal treatment assignments and higher overall response rates among trial participants. Compared with each individual ML method, the ensemble approach achieved the highest response rate and assigned the largest percentage of patients to their optimal treatments. For the real-world study, we successfully showed the potential improvements if the proposed design had been implemented in the study. ConclusionIn summary, the ML-based RAR design is a promising approach for assigning more patients to their personalized effective treatments, which makes the clinical trial more ethical and appealing. These features are especially desirable for late-stage cancer patients who have failed all the FDA-approved treatment options and only can get new treatments through clinical trials.

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Wang, Y., Carter, B. Z., Li, Z., Huang, X.. 2021-10-08. Application of machine learning methods in clinical trials for precision medicine. https://doi.org/10.1101/2021.10.06.463354

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