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bioRxiv · 10.1101/2021.07.21.453083

skater: An R package for SNP-based Kinship Analysis, Testing, and Evaluation

Turner, S. D.·Nagraj, V. P.·Scholz, M.·Jessa, S.·Acevedo, C.·Ge, J.·Woerner, A. E.·Budowle, B.
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Abstract

MotivationSNP-based kinship analysis with genome-wide relationship estimation and IBD segment analysis methods produces results that often require further downstream processing and manipulation. A dedicated software package that consistently and intuitively implements this analysis functionality is needed. ResultsHere we present the skater R package for SNP-based kinship analysis, testing, and evaluation with R. The skater package contains a suite of well-documented tools for importing, parsing, and analyzing pedigree data, performing relationship degree inference, benchmarking relationship degree classification, and summarizing IBD segment data. AvailabilityThe skater package is implemented as an R package and is released under the MIT license at https://github.com/signaturescience/skater. Documentation is available at https://signaturescience.github.io/skater.

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Turner, S. D., Nagraj, V. P., Scholz, M., Jessa, S., Acevedo, C., Ge, J., Woerner, A. E., Budowle, B.. 2021-07-22. skater: An R package for SNP-based Kinship Analysis, Testing, and Evaluation. https://doi.org/10.1101/2021.07.21.453083

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