Search bioRxiv⌕ Search

bioRxiv · 10.1101/2021.06.19.449102

Taxonomic Monograph of Saxicolella (Podostemaceae), African waterfall plants highly threatened by Hydro-Electric projects, with five new species.

Abstract

The genus Saxicolella Engl. (Podostemaceae) are African rheophytes, restricted to rapids and waterfalls as are all members of the family. Previously, Saxicolella sensu lato was shown to be polyphyletic with two separate clades in the molecular phylogenetic study of Koi et al. (2012). The name Pohliella Engl. was recently resurrected for one clade that is sister to the American genera Ceratolacis (Tul.)Wedd., Podostemum Michx. and all Old World Podostemoideae (podostemoids) (Cheek 2020). Pohliella has distichous phyllotaxy, bilocular ovaries, filiform roots with paired holdfasts, and rootcaps. The second clade, Saxicolella sensu stricto, including the type of the generic name, has spiral phyllotaxy, unilocular ovaries, ribbon-like or crustose roots that lack both holdfasts and rootcaps. Saxicolella sensu stricto, sampled from the type species, S. nana Engl. of Cameroon, is embedded within and near the base of the major clade of African podostemoids and is sister to all other African genera apart from Inversodicraea R.E.Fr. and Monandriella Engl. Recently reduced to three species in Cameroon and S.E. Nigeria by the resurrection of Pohliella (3 - 4 species in Ghana and Nigeria-Cameroon), Saxicolella sensu stricto is expanded to eight species in this monograph by description of five new taxa. Saxicolella futa Cheek and S. deniseae Cheek are newly described from Guinea, S. ijim Cheek from Cameroon, the informally named S. sp. A from Gabon, and S. angola Cheek from Angola. The known geographic range of the genus is thus expanded c. 2,500 km westwards to Guinea from eastern Nigeria and c.1,500 km southeastwards from near Yaounde to Cuanza do Sul, Angola. The greatest concentration of species occurs in the Cross-Sanaga interval of western Cameroon and eastern Nigeria, with three species. Cameroon (3 species) followed by Nigeria and Guinea (2 species each) are the countries with highest species diversity. The genus can be expected to be found in Sierra Leone, Liberia, Ivory Coast and Congo Republic. A classification is proposed grouping the species into three subgenera (Saxicolella, Butumia (G.Taylor) Cheek comb. et. stat. nov. and Kinkonia Cheek subgen. nov.) based on root morphology and shoot position and morphology. The discovery, morphology, circumscription, distribution, and ecology of Saxicolella is reviewed, an identification key to the species is presented, together with descriptions, synonymy, links to illustrations, and extinction risk assessments for each of the eight species now recognised. All of the species are provisionally assessed as either Endangered or Critically Endangered using the IUCN 2012 standard, making this genus among the most threatened of its size globally. The major threats, above all, are hydro-electric projects. Saxicolella deniseae may already be globally extinct, and two of the four known locations of S. angola appear lost, S. sp. A of Gabon is threatened at at least one of its three locations, while Saxicolella futa is threatened at all three locations, all due to incipient or active hydro-electric projects. Contamination of watercourses by increased turbidity from silt-load due anthropic changes and by eutrophication from pollution are also threats for the majority of the species.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Cheek, M., Molmou, D., Magassouba, S., Ghogue, J. P.. 2021-06-20. Taxonomic Monograph of Saxicolella (Podostemaceae), African waterfall plants highly threatened by Hydro-Electric projects, with five new species.. https://doi.org/10.1101/2021.06.19.449102

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

In-cell structural analysis reveals a distinctive chloroplast ribosome in Chlamydomonas reinhardtii

Chloroplast ribosomes synthesize plastid-encoded components of photosynthetic machinery, yet their structure and organization remain poorly understood. We combined cryo-focused ion beam milling, cryo-electron tomography and subtomogram averaging to determine native chloroplast ribosomes in Chlamydomonas reinhardtii. The 4.4-4.9 [A] structure revealed a large arch-like extension on the small subunit (SSU). Comparisons with bacterial and plant chloroplast ribosomes, supported by proteomics, AlphaFold3 predictions and a recent atomic model, indicate that the arch is formed by insertions and extensions in SSU proteins. Classification resolved active, thylakoid-associated ribosomes with density adjacent to the nascent peptide exit and an arch-moved state enriched among thylakoid-associated particles, with coordinated displacement of the arch and beak. Phylogenetic analysis revealed an evolutionary mosaic: the uS3c insertion is broadly distributed across Chlorophyceae, whereas the uS2c insertion, uS5c and PSRP7 are concentrated in Chlamydomonadales, with PSRP7 also in Sphaeropleales. Nuclear-encoded components were recruited stepwise onto a plastid-encoded scaffold, with all four under comparable purifying selection. These findings link a lineage-specific SSU extension to ribosome dynamics, thylakoid association and evolution, highlighting the value of in-cell structural analysis.

plant biology↗

Implementation and calibration of the Vaganov-Shashkin model in the virtualRings R package

Process-based tree growth models provide a mechanistic framework for investigating how climate conditions regulate tree growth across daily to annual time scales. Yet, their broader application across species and environments is constrained by the limited accessibility in open-source environments and the difficulty of estimating physiological parameters that are rarely measured directly. Here, we present virtualRings, a new R package integrating the Vaganov-Shashkin model (VSM) and the RINGS3 models, and focus on the implementation and calibration of VSM. Using tree-ring width observations from seven Northern Hemisphere sites across various environmental conditions, we compared the traditional bootstrap-based calibration approach with the Covariance Matrix Adaptation Evolution Strategy (CMA-ES). CMA-ES improved agreement between simulated and observed radial tree growth and provided an efficient approach for model parameter estimation. We further evaluated practical CMA-ES settings to balance computational cost and performance and discussed its potential limitations. The virtualRings package provides an open and reproducible platform for tree growth simulation, facilitating the application of important process-based models across species and environments and the investigation of how temperature and moisture constraints regulate daily tree-ring formation across spatial and temporal scales.

plant biology↗

Timing of transient darkness shapes carbon-nitrogen metabolism and sugar signaling in sugarcane

Fluctuating light is common in field environments. Yet, the mechanisms by which C4 crops coordinate carbon and nitrogen metabolism during short-term carbon deprivation remain poorly understood. Here, we imposed transient darkness at different phases of the diel cycle to assess how the timing of light loss affects photosynthesis, carbohydrate turnover, amino acid dynamics, and sugar-sensing pathways in commercial sugarcane leaves. Early-day darkness significantly impaired photosynthetic induction and revealed a temporal disconnect between stomatal and metabolic limitations, whereas midday and late-day treatments caused temporary, time-specific disruptions in carbon assimilation. These shifts altered the balance between sucrose preservation and catabolic mobilization, leading to treatment-dependent changes in starch reserves and free amino acids. Core circadian components largely maintained their phase relationships, but their amplitudes varied across treatments, consistent with partial decoupling from carbon status. Darkness also reorganized energy signaling, with SnRK1 and DIN6 responses associated with greater declines in sucrose. Notably, trehalose-pathway transcripts showed marked changes in network connectivity, with ScTPSIIG consistently emerging as a highly connected candidate associated with photosynthetic performance, water-use traits, sugar sensing, and amino acid metabolism. Overall, these results indicate that the timing of carbon limitation and residual sucrose availability shape distinct metabolic responses, while trehalose metabolism provides a candidate regulatory layer coordinating carbon-nitrogen adjustment during the diel cycle, highlighting class II TPS proteins as targets for functional investigation of metabolic resilience in sugarcane.

plant biology↗