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bioRxiv · 10.1101/2021.05.20.444991

Salt-dependent conformational changes of intrinsically disordered proteins

Wohl, S.·Jakubowski, M.·Zheng, W.
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Abstract

The flexible structure of an intrinsically disordered protein (IDP) is known to be perturbed by salt concentrations, which can be understood by electrostatic screening on charged amino acids. However, an IDP usually contains more uncharged residues which are influenced by the salting-out effect. Here we have parameterized the salting-out effect into a coarse-grained model using a set of Forster resonance energy transfer data and verified with experimental salt-dependent liquid-liquid phase separation (LLPS) of 17 proteins. The new model can correctly capture the behavior of 6 more sequences, resulting in a total of 13 when varying salt concentrations. Together with a survey of more than 500 IDP sequences, we conclude that the salting-out effect, which was considered to be secondary to electrostatic screening, is important for IDP sequences with moderate charged residues at physiological salt concentrations. The presented scheme is generally applicable to other computational models for capturing salt-dependent IDP conformations. Graphical TOC Entry O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/444991v1_ufig1.gif" ALT="Figure 1"> View larger version (21K): org.highwire.dtl.DTLVardef@e8fb3org.highwire.dtl.DTLVardef@1fc5be2org.highwire.dtl.DTLVardef@f45686org.highwire.dtl.DTLVardef@15c9cd5_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Wohl, S., Jakubowski, M., Zheng, W.. 2021-05-21. Salt-dependent conformational changes of intrinsically disordered proteins. https://doi.org/10.1101/2021.05.20.444991

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